miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 42423 0.66 0.463945
Target:  5'- aCGGUgcccaGCGAcACCGGGGCGCaucCGCc -3'
miRNA:   3'- gGCCG-----CGCU-UGGUCCUGCGgaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 42319 0.69 0.323106
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26751 3' -59.1 NC_005808.1 + 41531 0.75 0.134254
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 41129 0.67 0.43508
Target:  5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3'
miRNA:   3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 40870 0.67 0.416423
Target:  5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3'
miRNA:   3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5'
26751 3' -59.1 NC_005808.1 + 40579 0.67 0.425691
Target:  5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3'
miRNA:   3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5'
26751 3' -59.1 NC_005808.1 + 38938 0.66 0.473787
Target:  5'- -aGGCGUGGACgAGG-UGCUggCGUGa -3'
miRNA:   3'- ggCCGCGCUUGgUCCuGCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 38877 0.77 0.093817
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5'
26751 3' -59.1 NC_005808.1 + 38575 0.66 0.483734
Target:  5'- aCCcGCGCGGcaugACgCuGGugGCCggCGCGu -3'
miRNA:   3'- -GGcCGCGCU----UG-GuCCugCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 38214 0.68 0.346936
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26751 3' -59.1 NC_005808.1 + 37445 0.68 0.346936
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 37215 0.71 0.228156
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 37071 0.67 0.444587
Target:  5'- -gGGCG-GAACCuGGGCGgCCggCGUGu -3'
miRNA:   3'- ggCCGCgCUUGGuCCUGC-GGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 36250 0.71 0.234074
Target:  5'- cCCGGCcuuCGGGCCGGG-CGCUUUgGCu -3'
miRNA:   3'- -GGCCGc--GCUUGGUCCuGCGGAAgCGc -5'
26751 3' -59.1 NC_005808.1 + 36144 0.78 0.081574
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 35418 0.71 0.240121
Target:  5'- cCCGGCuGCG--UCAGGGCGUCagCGCGu -3'
miRNA:   3'- -GGCCG-CGCuuGGUCCUGCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 35056 0.71 0.248804
Target:  5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaagCGCGc -3'
miRNA:   3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa---GCGC- -5'
26751 3' -59.1 NC_005808.1 + 34838 0.77 0.088724
Target:  5'- -aGGCGCGAGCCuGGAUuCCUUCGUc -3'
miRNA:   3'- ggCCGCGCUUGGuCCUGcGGAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 34814 0.66 0.493779
Target:  5'- -gGGCgGCGAAggguGGACGCCggCGCa -3'
miRNA:   3'- ggCCG-CGCUUggu-CCUGCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 34669 0.7 0.279169
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.