Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26751 | 3' | -59.1 | NC_005808.1 | + | 34488 | 0.66 | 0.453243 |
Target: 5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3' miRNA: 3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 34129 | 0.66 | 0.463945 |
Target: 5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3' miRNA: 3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 33959 | 0.66 | 0.473787 |
Target: 5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3' miRNA: 3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 32145 | 0.67 | 0.444587 |
Target: 5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3' miRNA: 3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 31050 | 0.72 | 0.205739 |
Target: 5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3' miRNA: 3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 30638 | 0.8 | 0.056491 |
Target: 5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3' miRNA: 3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 29407 | 0.66 | 0.483734 |
Target: 5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3' miRNA: 3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 29392 | 0.67 | 0.425691 |
Target: 5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3' miRNA: 3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 28721 | 0.69 | 0.330911 |
Target: 5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3' miRNA: 3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 28407 | 0.67 | 0.398265 |
Target: 5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3' miRNA: 3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 27977 | 0.66 | 0.463945 |
Target: 5'- aCCGGCGCcgGAAgCAuGGAaGCCgaCGCa -3' miRNA: 3'- -GGCCGCG--CUUgGU-CCUgCGGaaGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 27455 | 0.67 | 0.425691 |
Target: 5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3' miRNA: 3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 26303 | 0.72 | 0.199917 |
Target: 5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3' miRNA: 3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 25511 | 0.7 | 0.285444 |
Target: 5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3' miRNA: 3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 25322 | 0.69 | 0.300518 |
Target: 5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3' miRNA: 3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 25222 | 0.73 | 0.166589 |
Target: 5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3' miRNA: 3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 24648 | 0.69 | 0.300518 |
Target: 5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3' miRNA: 3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 24498 | 0.66 | 0.45421 |
Target: 5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3' miRNA: 3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 24141 | 0.67 | 0.43508 |
Target: 5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3' miRNA: 3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 23761 | 0.66 | 0.473787 |
Target: 5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3' miRNA: 3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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