miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 34488 0.66 0.453243
Target:  5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3'
miRNA:   3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5'
26751 3' -59.1 NC_005808.1 + 34129 0.66 0.463945
Target:  5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3'
miRNA:   3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 33959 0.66 0.473787
Target:  5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3'
miRNA:   3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5'
26751 3' -59.1 NC_005808.1 + 32145 0.67 0.444587
Target:  5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3'
miRNA:   3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5'
26751 3' -59.1 NC_005808.1 + 31050 0.72 0.205739
Target:  5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3'
miRNA:   3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5'
26751 3' -59.1 NC_005808.1 + 30638 0.8 0.056491
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26751 3' -59.1 NC_005808.1 + 29407 0.66 0.483734
Target:  5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3'
miRNA:   3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 29392 0.67 0.425691
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 28721 0.69 0.330911
Target:  5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3'
miRNA:   3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5'
26751 3' -59.1 NC_005808.1 + 28407 0.67 0.398265
Target:  5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3'
miRNA:   3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5'
26751 3' -59.1 NC_005808.1 + 27977 0.66 0.463945
Target:  5'- aCCGGCGCcgGAAgCAuGGAaGCCgaCGCa -3'
miRNA:   3'- -GGCCGCG--CUUgGU-CCUgCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 27455 0.67 0.425691
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 26303 0.72 0.199917
Target:  5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3'
miRNA:   3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 25511 0.7 0.285444
Target:  5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3'
miRNA:   3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 25322 0.69 0.300518
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26751 3' -59.1 NC_005808.1 + 25222 0.73 0.166589
Target:  5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3'
miRNA:   3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5'
26751 3' -59.1 NC_005808.1 + 24648 0.69 0.300518
Target:  5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3'
miRNA:   3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 24498 0.66 0.45421
Target:  5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3'
miRNA:   3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5'
26751 3' -59.1 NC_005808.1 + 24141 0.67 0.43508
Target:  5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5'
26751 3' -59.1 NC_005808.1 + 23761 0.66 0.473787
Target:  5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3'
miRNA:   3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.