miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 24141 0.67 0.43508
Target:  5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5'
26751 3' -59.1 NC_005808.1 + 18094 1.09 0.000366
Target:  5'- gCCGGCGCGAACCAGGACGCCUUCGCGc -3'
miRNA:   3'- -GGCCGCGCUUGGUCCUGCGGAAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 17090 0.66 0.497824
Target:  5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3'
miRNA:   3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 14413 0.66 0.483734
Target:  5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3'
miRNA:   3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5'
26751 3' -59.1 NC_005808.1 + 33959 0.66 0.473787
Target:  5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3'
miRNA:   3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5'
26751 3' -59.1 NC_005808.1 + 23761 0.66 0.473787
Target:  5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3'
miRNA:   3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5'
26751 3' -59.1 NC_005808.1 + 38938 0.66 0.473787
Target:  5'- -aGGCGUGGACgAGG-UGCUggCGUGa -3'
miRNA:   3'- ggCCGCGCUUGgUCCuGCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 34129 0.66 0.463945
Target:  5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3'
miRNA:   3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 14319 0.67 0.445544
Target:  5'- aCUGGCGCGcgccuuggcugaacuGCCGGGcCuGCUggUUCGCGg -3'
miRNA:   3'- -GGCCGCGCu--------------UGGUCCuG-CGG--AAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 7057 0.67 0.441723
Target:  5'- aCCGGgGCG-GCCAGGuacuucaugACGCCgcggccuacccacggCGCGc -3'
miRNA:   3'- -GGCCgCGCuUGGUCC---------UGCGGaa-------------GCGC- -5'
26751 3' -59.1 NC_005808.1 + 30638 0.8 0.056491
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26751 3' -59.1 NC_005808.1 + 454 0.67 0.43508
Target:  5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3'
miRNA:   3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 17691 0.67 0.43508
Target:  5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3'
miRNA:   3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 29392 0.67 0.425691
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 27455 0.67 0.425691
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 23282 0.67 0.407281
Target:  5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3'
miRNA:   3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 28407 0.67 0.398265
Target:  5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3'
miRNA:   3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5'
26751 3' -59.1 NC_005808.1 + 690 0.67 0.398265
Target:  5'- gCGGCGCcGGCCGGGcCGCCcaagauacCGCc -3'
miRNA:   3'- gGCCGCGcUUGGUCCuGCGGaa------GCGc -5'
26751 3' -59.1 NC_005808.1 + 11429 0.68 0.389378
Target:  5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3'
miRNA:   3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 23471 0.68 0.386737
Target:  5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3'
miRNA:   3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.