Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26751 | 3' | -59.1 | NC_005808.1 | + | 9321 | 0.68 | 0.355154 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 9225 | 0.68 | 0.355154 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 35056 | 0.71 | 0.248804 |
Target: 5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaagCGCGc -3' miRNA: 3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa---GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 25222 | 0.73 | 0.166589 |
Target: 5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3' miRNA: 3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 40579 | 0.67 | 0.425691 |
Target: 5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3' miRNA: 3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 17232 | 0.67 | 0.398265 |
Target: 5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3' miRNA: 3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 9129 | 0.68 | 0.355154 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 4377 | 0.74 | 0.141751 |
Target: 5'- gCGGaUGCGcAGCCAGG-CGCCgUCGCGc -3' miRNA: 3'- gGCC-GCGC-UUGGUCCuGCGGaAGCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 5442 | 0.68 | 0.384108 |
Target: 5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3' miRNA: 3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 7756 | 0.74 | 0.137956 |
Target: 5'- uUGGCGaCGAAggaauCCAGGcucGCGCCUUCGCc -3' miRNA: 3'- gGCCGC-GCUU-----GGUCC---UGCGGAAGCGc -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 9177 | 0.68 | 0.355154 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 9369 | 0.68 | 0.355154 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 15141 | 0.69 | 0.31241 |
Target: 5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3' miRNA: 3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 10489 | 0.71 | 0.252605 |
Target: 5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3' miRNA: 3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 12993 | 0.71 | 0.234074 |
Target: 5'- cCCGGCGCuGGACaacuGGcaaaccgcGCGCCUgggCGCGg -3' miRNA: 3'- -GGCCGCG-CUUGgu--CC--------UGCGGAa--GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 26303 | 0.72 | 0.199917 |
Target: 5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3' miRNA: 3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 41129 | 0.67 | 0.43508 |
Target: 5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3' miRNA: 3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 3254 | 0.67 | 0.425691 |
Target: 5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3' miRNA: 3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 1750 | 0.67 | 0.416423 |
Target: 5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3' miRNA: 3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5' |
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26751 | 3' | -59.1 | NC_005808.1 | + | 6355 | 0.67 | 0.403659 |
Target: 5'- cCCGGCcCGAagGCCGGGGCGCUggguuacaccaggUCGg- -3' miRNA: 3'- -GGCCGcGCU--UGGUCCUGCGGa------------AGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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