miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 9129 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9177 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9225 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9273 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9321 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9369 0.68 0.355154
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 9508 0.66 0.473787
Target:  5'- -gGGCGagGAugUAGGcCGCCgcgUCGCu -3'
miRNA:   3'- ggCCGCg-CUugGUCCuGCGGa--AGCGc -5'
26751 3' -59.1 NC_005808.1 + 9733 0.69 0.330911
Target:  5'- gCCGcGgGCGAACUgcucgugguGGGCGCgCUUCGCc -3'
miRNA:   3'- -GGC-CgCGCUUGGu--------CCUGCG-GAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 9743 0.67 0.416423
Target:  5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3'
miRNA:   3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 9796 0.67 0.410923
Target:  5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3'
miRNA:   3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 9874 0.7 0.265618
Target:  5'- aCCGGCGCGcugcuucucGGCCAGG-CGCgUg-GCGa -3'
miRNA:   3'- -GGCCGCGC---------UUGGUCCuGCGgAagCGC- -5'
26751 3' -59.1 NC_005808.1 + 9955 0.66 0.473787
Target:  5'- gCGGCGcCGAACuucgaCAGGACaGCaccgcggcgUCGCGg -3'
miRNA:   3'- gGCCGC-GCUUG-----GUCCUG-CGga-------AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 10489 0.71 0.252605
Target:  5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 11357 0.66 0.461989
Target:  5'- cCCGGCucguagcugggccGCGcGCCGGGGuucuucaUGCUUUCGCc -3'
miRNA:   3'- -GGCCG-------------CGCuUGGUCCU-------GCGGAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 11429 0.68 0.389378
Target:  5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3'
miRNA:   3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 12993 0.71 0.234074
Target:  5'- cCCGGCGCuGGACaacuGGcaaaccgcGCGCCUgggCGCGg -3'
miRNA:   3'- -GGCCGCG-CUUGgu--CC--------UGCGGAa--GCGC- -5'
26751 3' -59.1 NC_005808.1 + 13058 0.67 0.444587
Target:  5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3'
miRNA:   3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5'
26751 3' -59.1 NC_005808.1 + 13252 0.68 0.37802
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 14319 0.67 0.445544
Target:  5'- aCUGGCGCGcgccuuggcugaacuGCCGGGcCuGCUggUUCGCGg -3'
miRNA:   3'- -GGCCGCGCu--------------UGGUCCuG-CGG--AAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 14413 0.66 0.483734
Target:  5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3'
miRNA:   3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.