miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 37071 0.67 0.444587
Target:  5'- -gGGCG-GAACCuGGGCGgCCggCGUGu -3'
miRNA:   3'- ggCCGCgCUUGGuCCUGC-GGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 13058 0.67 0.444587
Target:  5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3'
miRNA:   3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5'
26751 3' -59.1 NC_005808.1 + 32145 0.67 0.444587
Target:  5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3'
miRNA:   3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5'
26751 3' -59.1 NC_005808.1 + 41129 0.67 0.43508
Target:  5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3'
miRNA:   3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5'
26751 3' -59.1 NC_005808.1 + 20804 0.67 0.434135
Target:  5'- gCCGGUGUccgccaaGAACCAGGACaucagcaccguGCCgg-GCGg -3'
miRNA:   3'- -GGCCGCG-------CUUGGUCCUG-----------CGGaagCGC- -5'
26751 3' -59.1 NC_005808.1 + 17282 0.67 0.425691
Target:  5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3'
miRNA:   3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5'
26751 3' -59.1 NC_005808.1 + 3254 0.67 0.425691
Target:  5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3'
miRNA:   3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 40579 0.67 0.425691
Target:  5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3'
miRNA:   3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5'
26751 3' -59.1 NC_005808.1 + 19729 0.67 0.425691
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26751 3' -59.1 NC_005808.1 + 9743 0.67 0.416423
Target:  5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3'
miRNA:   3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 1750 0.67 0.416423
Target:  5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3'
miRNA:   3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 40870 0.67 0.416423
Target:  5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3'
miRNA:   3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5'
26751 3' -59.1 NC_005808.1 + 9796 0.67 0.410923
Target:  5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3'
miRNA:   3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 6355 0.67 0.403659
Target:  5'- cCCGGCcCGAagGCCGGGGCGCUggguuacaccaggUCGg- -3'
miRNA:   3'- -GGCCGcGCU--UGGUCCUGCGGa------------AGCgc -5'
26751 3' -59.1 NC_005808.1 + 34488 0.66 0.453243
Target:  5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3'
miRNA:   3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5'
26751 3' -59.1 NC_005808.1 + 16263 0.66 0.45421
Target:  5'- gCGGCGCG-GCCAGuuCGCggugCGCGu -3'
miRNA:   3'- gGCCGCGCuUGGUCcuGCGgaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 24498 0.66 0.45421
Target:  5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3'
miRNA:   3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5'
26751 3' -59.1 NC_005808.1 + 11357 0.66 0.461989
Target:  5'- cCCGGCucguagcugggccGCGcGCCGGGGuucuucaUGCUUUCGCc -3'
miRNA:   3'- -GGCCG-------------CGCuUGGUCCU-------GCGGAAGCGc -5'
26751 3' -59.1 NC_005808.1 + 5636 0.66 0.463945
Target:  5'- gCGGCGC-AGCUugcuGGugGCUggaCGCGg -3'
miRNA:   3'- gGCCGCGcUUGGu---CCugCGGaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 7247 0.66 0.463945
Target:  5'- aCUGGCGCGGGCCGauguCGCCggccUUGUGc -3'
miRNA:   3'- -GGCCGCGCUUGGUccu-GCGGa---AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.