miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 12165 0.67 0.634339
Target:  5'- -aGGGCGAGGCCCuGCCcGcgCUcaUCGCc -3'
miRNA:   3'- cgUCCGCUUUGGG-UGGuCaaGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 12679 0.72 0.382074
Target:  5'- cGCAGGCgcgugucGAGGCCCGCCuugauagCCUgGCu -3'
miRNA:   3'- -CGUCCG-------CUUUGGGUGGucaa---GGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 13301 0.68 0.611846
Target:  5'- uGCuGGGCaAGGgCCAgCAGUUCgUCGCc -3'
miRNA:   3'- -CG-UCCGcUUUgGGUgGUCAAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 13439 0.67 0.645588
Target:  5'- --cGGC-AGGCCCGCCAGcuuggcggCCUCGg -3'
miRNA:   3'- cguCCGcUUUGGGUGGUCaa------GGAGCg -5'
26758 3' -54.2 NC_005808.1 + 15099 0.76 0.201302
Target:  5'- aGCuGGCGGccgAGgCCGCCGGcaUCCUCGCg -3'
miRNA:   3'- -CGuCCGCU---UUgGGUGGUCa-AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 15894 0.73 0.322807
Target:  5'- cGUAGGUGAGGCCCAgCAGcUUgC-CGCu -3'
miRNA:   3'- -CGUCCGCUUUGGGUgGUC-AAgGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 16786 0.67 0.634339
Target:  5'- -aAGGCGAuGgUCGCCAGUUgCCaguuggUCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCAA-GG------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 17082 0.71 0.440172
Target:  5'- -aAGGCGAAGCCgGCgCGGUU-CUCGg -3'
miRNA:   3'- cgUCCGCUUUGGgUG-GUCAAgGAGCg -5'
26758 3' -54.2 NC_005808.1 + 17688 0.72 0.373945
Target:  5'- cGUAGGCGAAGCgCCACUcGggCCgggaaaugcccaUCGCg -3'
miRNA:   3'- -CGUCCGCUUUG-GGUGGuCaaGG------------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 17834 0.74 0.269972
Target:  5'- uCGGGCGGGuugauGCCCGCCAccGUggCCUCGUc -3'
miRNA:   3'- cGUCCGCUU-----UGGGUGGU--CAa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 19052 0.68 0.578267
Target:  5'- cGCcGGCGGcgUCgAUCAGcgugUCCUCGCc -3'
miRNA:   3'- -CGuCCGCUuuGGgUGGUCa---AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 19111 0.69 0.545104
Target:  5'- cGCAGGuCGAGauucccacgGCgCACCuGUUCCaCGCc -3'
miRNA:   3'- -CGUCC-GCUU---------UGgGUGGuCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 20960 0.71 0.439179
Target:  5'- -aAGGCGAGuuucuacGCCgACCuGUUCCUCa- -3'
miRNA:   3'- cgUCCGCUU-------UGGgUGGuCAAGGAGcg -5'
26758 3' -54.2 NC_005808.1 + 22492 0.68 0.578267
Target:  5'- gGCGGGCuGGGcuggucauGCCCGCCAucaUCCcCGCa -3'
miRNA:   3'- -CGUCCG-CUU--------UGGGUGGUca-AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 23111 0.71 0.392169
Target:  5'- cGCA-GCGGccuGCCCACCGGcaCCUgGCg -3'
miRNA:   3'- -CGUcCGCUu--UGGGUGGUCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 23856 1.13 0.000527
Target:  5'- gGCAGGCGAAACCCACCAGUUCCUCGCc -3'
miRNA:   3'- -CGUCCGCUUUGGGUGGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24338 0.66 0.705824
Target:  5'- gGCAGaGCGAuGCCCGuguuguuggucggguCgAGggCUUCGCg -3'
miRNA:   3'- -CGUC-CGCUuUGGGU---------------GgUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24565 0.68 0.597259
Target:  5'- gGCGauGGCGAGGCCgGCCAcggucgggccguccGgcgugUCCUUGCc -3'
miRNA:   3'- -CGU--CCGCUUUGGgUGGU--------------Ca----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24765 0.74 0.263019
Target:  5'- cGguGGCGGgcaucAACCCGCCcgagGGUUCCgUGCa -3'
miRNA:   3'- -CguCCGCU-----UUGGGUGG----UCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 25141 0.79 0.132438
Target:  5'- -gGGGCGAagaagucgauAACCCACCGGc-CCUCGCu -3'
miRNA:   3'- cgUCCGCU----------UUGGGUGGUCaaGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.