miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 164 0.69 0.512579
Target:  5'- cGCAGGCGGAugCgCcCCGGUg--UCGCu -3'
miRNA:   3'- -CGUCCGCUUugG-GuGGUCAaggAGCG- -5'
26758 3' -54.2 NC_005808.1 + 654 0.66 0.701414
Target:  5'- uCAGGCGggGgcuuuugguguuUCUGCCgcGGUaCCUCGCu -3'
miRNA:   3'- cGUCCGCuuU------------GGGUGG--UCAaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 1314 0.67 0.645588
Target:  5'- -aGGGCGAcGgCCACCAGg-CCgacaagCGCg -3'
miRNA:   3'- cgUCCGCUuUgGGUGGUCaaGGa-----GCG- -5'
26758 3' -54.2 NC_005808.1 + 1629 0.66 0.679213
Target:  5'- uCGGGCGugucguACCCAUCGGgguaggUCUgCGCg -3'
miRNA:   3'- cGUCCGCuu----UGGGUGGUCa-----AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 1723 0.71 0.420565
Target:  5'- uGCcGGCGAGGgCguCCAagUCCUCGCg -3'
miRNA:   3'- -CGuCCGCUUUgGguGGUcaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 1751 0.67 0.623088
Target:  5'- cCGGGCGGucauGGCCgGCCuGcgCCUgGCg -3'
miRNA:   3'- cGUCCGCU----UUGGgUGGuCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 1761 0.66 0.690343
Target:  5'- aCAGGCG-AugCCAUauuGUUCCUC-Ca -3'
miRNA:   3'- cGUCCGCuUugGGUGgu-CAAGGAGcG- -5'
26758 3' -54.2 NC_005808.1 + 1837 0.7 0.470528
Target:  5'- -gAGGCGAgaAACCgCugCAGagauucaUCCUCGCc -3'
miRNA:   3'- cgUCCGCU--UUGG-GugGUCa------AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 2037 0.67 0.656824
Target:  5'- cGCAGGCGAuagAACacggCGCgCAaUUCCUCGg -3'
miRNA:   3'- -CGUCCGCU---UUGg---GUG-GUcAAGGAGCg -5'
26758 3' -54.2 NC_005808.1 + 2515 0.66 0.723334
Target:  5'- uUAGGCGggGCUUcgguucguagACCAGgaaUUCGCg -3'
miRNA:   3'- cGUCCGCuuUGGG----------UGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 3480 0.67 0.644463
Target:  5'- cGCGGGCGAGuucgacgGCCCgcuguACCAGUaCgCagCGCg -3'
miRNA:   3'- -CGUCCGCUU-------UGGG-----UGGUCAaG-Ga-GCG- -5'
26758 3' -54.2 NC_005808.1 + 4372 0.78 0.165942
Target:  5'- gGCAGGCGGAugCgcaGCCAGgcgCCgUCGCg -3'
miRNA:   3'- -CGUCCGCUUugGg--UGGUCaa-GG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 5095 0.66 0.679213
Target:  5'- aCAGGCGGccGGCCCAgcguCCGGUgcggCUggCGCc -3'
miRNA:   3'- cGUCCGCU--UUGGGU----GGUCAa---GGa-GCG- -5'
26758 3' -54.2 NC_005808.1 + 6387 0.66 0.722246
Target:  5'- uCAGGCGcAGGCCgGCCGGc-CCgguguagUCGCg -3'
miRNA:   3'- cGUCCGC-UUUGGgUGGUCaaGG-------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 7252 0.68 0.567155
Target:  5'- cGCGGGCcGAugUCGCCGG--CCUUGUg -3'
miRNA:   3'- -CGUCCGcUUugGGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 7637 0.72 0.382985
Target:  5'- gGCGcGGCucGACCCacGCCGGcUCCUUGCc -3'
miRNA:   3'- -CGU-CCGcuUUGGG--UGGUCaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 9017 0.75 0.256213
Target:  5'- aGCAGGCG--GCgCACCAGUUCgUCa- -3'
miRNA:   3'- -CGUCCGCuuUGgGUGGUCAAGgAGcg -5'
26758 3' -54.2 NC_005808.1 + 10397 0.66 0.712415
Target:  5'- cCGGGUGAugcAGCgCGCCGauggCCUCGCc -3'
miRNA:   3'- cGUCCGCU---UUGgGUGGUcaa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 10916 0.73 0.330134
Target:  5'- --uGGCGAccuGCCCGCCGGUUugcagggCCUCGg -3'
miRNA:   3'- cguCCGCUu--UGGGUGGUCAA-------GGAGCg -5'
26758 3' -54.2 NC_005808.1 + 11362 0.67 0.656824
Target:  5'- cGguGGCGAccuGCUCGCCcGGcaCCUCGg -3'
miRNA:   3'- -CguCCGCUu--UGGGUGG-UCaaGGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.