Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26758 | 3' | -54.2 | NC_005808.1 | + | 28627 | 0.81 | 0.102266 |
Target: 5'- cGCGGaUGAGGCCgGCCAGUUCCgcgCGCa -3' miRNA: 3'- -CGUCcGCUUUGGgUGGUCAAGGa--GCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 31817 | 0.69 | 0.534182 |
Target: 5'- -aAGGCGAAGCCCAUgAa--CCUgCGCa -3' miRNA: 3'- cgUCCGCUUUGGGUGgUcaaGGA-GCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 164 | 0.69 | 0.512579 |
Target: 5'- cGCAGGCGGAugCgCcCCGGUg--UCGCu -3' miRNA: 3'- -CGUCCGCUUugG-GuGGUCAaggAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 29467 | 0.69 | 0.501913 |
Target: 5'- cCAGGCGAcgaAGCgCgcgGCCAGUUCCgCGUc -3' miRNA: 3'- cGUCCGCU---UUGgG---UGGUCAAGGaGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 1837 | 0.7 | 0.470528 |
Target: 5'- -gAGGCGAgaAACCgCugCAGagauucaUCCUCGCc -3' miRNA: 3'- cgUCCGCU--UUGG-GugGUCa------AGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 32778 | 0.7 | 0.460288 |
Target: 5'- gGC-GGCGAAGUCCGCCcucGGcaCCUCGCu -3' miRNA: 3'- -CGuCCGCUUUGGGUGG---UCaaGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 17082 | 0.71 | 0.440172 |
Target: 5'- -aAGGCGAAGCCgGCgCGGUU-CUCGg -3' miRNA: 3'- cgUCCGCUUUGGgUG-GUCAAgGAGCg -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 1723 | 0.71 | 0.420565 |
Target: 5'- uGCcGGCGAGGgCguCCAagUCCUCGCg -3' miRNA: 3'- -CGuCCGCUUUgGguGGUcaAGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 38002 | 0.71 | 0.410961 |
Target: 5'- --cGcCGAGGCCgAgCAGUUCCUCGCc -3' miRNA: 3'- cguCcGCUUUGGgUgGUCAAGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 29330 | 0.71 | 0.410961 |
Target: 5'- cGguGGCGGucGCCgGCCAagUCCUCGa -3' miRNA: 3'- -CguCCGCUu-UGGgUGGUcaAGGAGCg -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 7637 | 0.72 | 0.382985 |
Target: 5'- gGCGcGGCucGACCCacGCCGGcUCCUUGCc -3' miRNA: 3'- -CGU-CCGcuUUGGG--UGGUCaAGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 12679 | 0.72 | 0.382074 |
Target: 5'- cGCAGGCgcgugucGAGGCCCGCCuugauagCCUgGCu -3' miRNA: 3'- -CGUCCG-------CUUUGGGUGGucaa---GGAgCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 17688 | 0.72 | 0.373945 |
Target: 5'- cGUAGGCGAAGCgCCACUcGggCCgggaaaugcccaUCGCg -3' miRNA: 3'- -CGUCCGCUUUG-GGUGGuCaaGG------------AGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 29040 | 0.72 | 0.356303 |
Target: 5'- cCAGGuCGAuACCCACCGGcggCUCGUa -3' miRNA: 3'- cGUCC-GCUuUGGGUGGUCaagGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 10916 | 0.73 | 0.330134 |
Target: 5'- --uGGCGAccuGCCCGCCGGUUugcagggCCUCGg -3' miRNA: 3'- cguCCGCUu--UGGGUGGUCAA-------GGAGCg -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 15894 | 0.73 | 0.322807 |
Target: 5'- cGUAGGUGAGGCCCAgCAGcUUgC-CGCu -3' miRNA: 3'- -CGUCCGCUUUGGGUgGUC-AAgGaGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 17834 | 0.74 | 0.269972 |
Target: 5'- uCGGGCGGGuugauGCCCGCCAccGUggCCUCGUc -3' miRNA: 3'- cGUCCGCUU-----UGGGUGGU--CAa-GGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 9017 | 0.75 | 0.256213 |
Target: 5'- aGCAGGCG--GCgCACCAGUUCgUCa- -3' miRNA: 3'- -CGUCCGCuuUGgGUGGUCAAGgAGcg -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 25141 | 0.79 | 0.132438 |
Target: 5'- -gGGGCGAagaagucgauAACCCACCGGc-CCUCGCu -3' miRNA: 3'- cgUCCGCU----------UUGGGUGGUCaaGGAGCG- -5' |
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26758 | 3' | -54.2 | NC_005808.1 | + | 23856 | 1.13 | 0.000527 |
Target: 5'- gGCAGGCGAAACCCACCAGUUCCUCGCc -3' miRNA: 3'- -CGUCCGCUUUGGGUGGUCAAGGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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