miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 41253 0.67 0.634339
Target:  5'- cGCaAGGCc--GCCgACCAcggcUUCCUCGCg -3'
miRNA:   3'- -CG-UCCGcuuUGGgUGGUc---AAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 4372 0.78 0.165942
Target:  5'- gGCAGGCGGAugCgcaGCCAGgcgCCgUCGCg -3'
miRNA:   3'- -CGUCCGCUUugGg--UGGUCaa-GG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 33483 0.77 0.175434
Target:  5'- cGCuaucuGGCGAuaccuGCCCACCGGcaagaacggCCUCGCg -3'
miRNA:   3'- -CGu----CCGCUu----UGGGUGGUCaa-------GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 29619 0.68 0.567155
Target:  5'- gGCGGGCGGuuuucggaaCUGCCGGUgUCCauUCGCg -3'
miRNA:   3'- -CGUCCGCUuug------GGUGGUCA-AGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 7252 0.68 0.567155
Target:  5'- cGCGGGCcGAugUCGCCGG--CCUUGUg -3'
miRNA:   3'- -CGUCCGcUUugGGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 15099 0.76 0.201302
Target:  5'- aGCuGGCGGccgAGgCCGCCGGcaUCCUCGCg -3'
miRNA:   3'- -CGuCCGCU---UUgGGUGGUCa-AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 32852 0.71 0.440172
Target:  5'- -gAGGCGAAgcgcGCCCACCacgagcAGUUCgCcCGCg -3'
miRNA:   3'- cgUCCGCUU----UGGGUGG------UCAAG-GaGCG- -5'
26758 3' -54.2 NC_005808.1 + 19111 0.69 0.545104
Target:  5'- cGCAGGuCGAGauucccacgGCgCACCuGUUCCaCGCc -3'
miRNA:   3'- -CGUCC-GCUU---------UGgGUGGuCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 12165 0.67 0.634339
Target:  5'- -aGGGCGAGGCCCuGCCcGcgCUcaUCGCc -3'
miRNA:   3'- cgUCCGCUUUGGG-UGGuCaaGG--AGCG- -5'
26758 3' -54.2 NC_005808.1 + 31099 0.67 0.668036
Target:  5'- cGCAGGCGcuGCCCuuugCGGUg--UCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGug--GUCAaggAGCG- -5'
26758 3' -54.2 NC_005808.1 + 28192 0.66 0.723334
Target:  5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3'
miRNA:   3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5'
26758 3' -54.2 NC_005808.1 + 23111 0.71 0.392169
Target:  5'- cGCA-GCGGccuGCCCACCGGcaCCUgGCg -3'
miRNA:   3'- -CGUcCGCUu--UGGGUGGUCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 24765 0.74 0.263019
Target:  5'- cGguGGCGGgcaucAACCCGCCcgagGGUUCCgUGCa -3'
miRNA:   3'- -CguCCGCU-----UUGGGUGG----UCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 1751 0.67 0.623088
Target:  5'- cCGGGCGGucauGGCCgGCCuGcgCCUgGCg -3'
miRNA:   3'- cGUCCGCU----UUGGgUGGuCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 34752 0.67 0.623088
Target:  5'- ---cGCGAAGCCCGCCuca-CCaUCGCg -3'
miRNA:   3'- cgucCGCUUUGGGUGGucaaGG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 20960 0.71 0.439179
Target:  5'- -aAGGCGAGuuucuacGCCgACCuGUUCCUCa- -3'
miRNA:   3'- cgUCCGCUU-------UGGgUGGuCAAGGAGcg -5'
26758 3' -54.2 NC_005808.1 + 39709 0.67 0.656824
Target:  5'- cGCGcGGCGucuguGCCCAUCAccUUCUUGCa -3'
miRNA:   3'- -CGU-CCGCuu---UGGGUGGUcaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 40747 0.67 0.668036
Target:  5'- aGCAcGGCGAGGaugaaucucUgCAgCGGUUUCUCGCc -3'
miRNA:   3'- -CGU-CCGCUUU---------GgGUgGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 31453 0.69 0.522258
Target:  5'- cGCAGGCG--GCCCAgCAGcaggCCgaacugcUCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGUgGUCaa--GG-------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 13301 0.68 0.611846
Target:  5'- uGCuGGGCaAGGgCCAgCAGUUCgUCGCc -3'
miRNA:   3'- -CG-UCCGcUUUgGGUgGUCAAGgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.