miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 23856 1.13 0.000527
Target:  5'- gGCAGGCGAAACCCACCAGUUCCUCGCc -3'
miRNA:   3'- -CGUCCGCUUUGGGUGGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 28627 0.81 0.102266
Target:  5'- cGCGGaUGAGGCCgGCCAGUUCCgcgCGCa -3'
miRNA:   3'- -CGUCcGCUUUGGgUGGUCAAGGa--GCG- -5'
26758 3' -54.2 NC_005808.1 + 25141 0.79 0.132438
Target:  5'- -gGGGCGAagaagucgauAACCCACCGGc-CCUCGCu -3'
miRNA:   3'- cgUCCGCU----------UUGGGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 4372 0.78 0.165942
Target:  5'- gGCAGGCGGAugCgcaGCCAGgcgCCgUCGCg -3'
miRNA:   3'- -CGUCCGCUUugGg--UGGUCaa-GG-AGCG- -5'
26758 3' -54.2 NC_005808.1 + 33483 0.77 0.175434
Target:  5'- cGCuaucuGGCGAuaccuGCCCACCGGcaagaacggCCUCGCg -3'
miRNA:   3'- -CGu----CCGCUu----UGGGUGGUCaa-------GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 15099 0.76 0.201302
Target:  5'- aGCuGGCGGccgAGgCCGCCGGcaUCCUCGCg -3'
miRNA:   3'- -CGuCCGCU---UUgGGUGGUCa-AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 9017 0.75 0.256213
Target:  5'- aGCAGGCG--GCgCACCAGUUCgUCa- -3'
miRNA:   3'- -CGUCCGCuuUGgGUGGUCAAGgAGcg -5'
26758 3' -54.2 NC_005808.1 + 24765 0.74 0.263019
Target:  5'- cGguGGCGGgcaucAACCCGCCcgagGGUUCCgUGCa -3'
miRNA:   3'- -CguCCGCU-----UUGGGUGG----UCAAGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 17834 0.74 0.269972
Target:  5'- uCGGGCGGGuugauGCCCGCCAccGUggCCUCGUc -3'
miRNA:   3'- cGUCCGCUU-----UGGGUGGU--CAa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 15894 0.73 0.322807
Target:  5'- cGUAGGUGAGGCCCAgCAGcUUgC-CGCu -3'
miRNA:   3'- -CGUCCGCUUUGGGUgGUC-AAgGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 10916 0.73 0.330134
Target:  5'- --uGGCGAccuGCCCGCCGGUUugcagggCCUCGg -3'
miRNA:   3'- cguCCGCUu--UGGGUGGUCAA-------GGAGCg -5'
26758 3' -54.2 NC_005808.1 + 29040 0.72 0.356303
Target:  5'- cCAGGuCGAuACCCACCGGcggCUCGUa -3'
miRNA:   3'- cGUCC-GCUuUGGGUGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 17688 0.72 0.373945
Target:  5'- cGUAGGCGAAGCgCCACUcGggCCgggaaaugcccaUCGCg -3'
miRNA:   3'- -CGUCCGCUUUG-GGUGGuCaaGG------------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 12679 0.72 0.382074
Target:  5'- cGCAGGCgcgugucGAGGCCCGCCuugauagCCUgGCu -3'
miRNA:   3'- -CGUCCG-------CUUUGGGUGGucaa---GGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 7637 0.72 0.382985
Target:  5'- gGCGcGGCucGACCCacGCCGGcUCCUUGCc -3'
miRNA:   3'- -CGU-CCGcuUUGGG--UGGUCaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 23111 0.71 0.392169
Target:  5'- cGCA-GCGGccuGCCCACCGGcaCCUgGCg -3'
miRNA:   3'- -CGUcCGCUu--UGGGUGGUCaaGGAgCG- -5'
26758 3' -54.2 NC_005808.1 + 29330 0.71 0.410961
Target:  5'- cGguGGCGGucGCCgGCCAagUCCUCGa -3'
miRNA:   3'- -CguCCGCUu-UGGgUGGUcaAGGAGCg -5'
26758 3' -54.2 NC_005808.1 + 38002 0.71 0.410961
Target:  5'- --cGcCGAGGCCgAgCAGUUCCUCGCc -3'
miRNA:   3'- cguCcGCUUUGGgUgGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 1723 0.71 0.420565
Target:  5'- uGCcGGCGAGGgCguCCAagUCCUCGCg -3'
miRNA:   3'- -CGuCCGCUUUgGguGGUcaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 20960 0.71 0.439179
Target:  5'- -aAGGCGAGuuucuacGCCgACCuGUUCCUCa- -3'
miRNA:   3'- cgUCCGCUU-------UGGgUGGuCAAGGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.