Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26758 | 5' | -59.5 | NC_005808.1 | + | 6463 | 0.68 | 0.292285 |
Target: 5'- uCGCCGucgcgcAGGAAcUGCacGCCGCgcagGCCCGCa -3' miRNA: 3'- uGCGGU------UCCUUcACG--CGGUG----CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 39832 | 0.68 | 0.292285 |
Target: 5'- aACGUCGAGGugucggcAGUGguCGgCACGCCCGa -3' miRNA: 3'- -UGCGGUUCCu------UCAC--GCgGUGCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23764 | 0.69 | 0.287948 |
Target: 5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3' miRNA: 3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 35249 | 0.69 | 0.278026 |
Target: 5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3' miRNA: 3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 29337 | 0.69 | 0.271107 |
Target: 5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3' miRNA: 3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 35370 | 0.69 | 0.271107 |
Target: 5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3' miRNA: 3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 10750 | 0.69 | 0.271107 |
Target: 5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3' miRNA: 3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 33700 | 0.69 | 0.251181 |
Target: 5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3' miRNA: 3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 32470 | 0.69 | 0.251181 |
Target: 5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3' miRNA: 3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 8173 | 0.7 | 0.244812 |
Target: 5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3' miRNA: 3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 8295 | 0.7 | 0.238578 |
Target: 5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3' miRNA: 3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 4570 | 0.7 | 0.238578 |
Target: 5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3' miRNA: 3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 34443 | 0.7 | 0.238578 |
Target: 5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3' miRNA: 3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 12715 | 0.7 | 0.238578 |
Target: 5'- cAUGCCGGGGggGgggugGUGCUAgaccCGUUCGCa -3' miRNA: 3'- -UGCGGUUCCuuCa----CGCGGU----GCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 24119 | 0.7 | 0.232478 |
Target: 5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3' miRNA: 3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 29090 | 0.7 | 0.230673 |
Target: 5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3' miRNA: 3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 24466 | 0.7 | 0.226509 |
Target: 5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3' miRNA: 3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 32886 | 0.7 | 0.22067 |
Target: 5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3' miRNA: 3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23468 | 0.7 | 0.214961 |
Target: 5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3' miRNA: 3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 357 | 0.7 | 0.214961 |
Target: 5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3' miRNA: 3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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