Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26758 | 5' | -59.5 | NC_005808.1 | + | 14792 | 0.72 | 0.155854 |
Target: 5'- cGCGCgCGAGGAcgugcugcGGcUGCGCgGCGCgCGCu -3' miRNA: 3'- -UGCG-GUUCCU--------UC-ACGCGgUGCGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 15089 | 0.66 | 0.41718 |
Target: 5'- cGCGCCGA-GAAGcugGCgGCCGaggcCGCCgGCa -3' miRNA: 3'- -UGCGGUUcCUUCa--CG-CGGU----GCGGgCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 15176 | 0.78 | 0.061573 |
Target: 5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3' miRNA: 3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 16053 | 0.73 | 0.139673 |
Target: 5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3' miRNA: 3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 16541 | 0.72 | 0.164567 |
Target: 5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3' miRNA: 3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 16965 | 0.66 | 0.436132 |
Target: 5'- cUGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3' miRNA: 3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17268 | 0.66 | 0.39331 |
Target: 5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3' miRNA: 3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 17448 | 0.66 | 0.389717 |
Target: 5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3' miRNA: 3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 18561 | 0.66 | 0.436132 |
Target: 5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3' miRNA: 3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 18650 | 0.68 | 0.32723 |
Target: 5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3' miRNA: 3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 18854 | 0.66 | 0.389717 |
Target: 5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3' miRNA: 3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 19058 | 0.7 | 0.213834 |
Target: 5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3' miRNA: 3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 20749 | 0.75 | 0.102817 |
Target: 5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3' miRNA: 3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 22480 | 0.66 | 0.407895 |
Target: 5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3' miRNA: 3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 22717 | 0.67 | 0.35499 |
Target: 5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3' miRNA: 3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23351 | 0.68 | 0.330411 |
Target: 5'- gACGCCGA-GAAGUucauGgGCCugACGCCgCGCu -3' miRNA: 3'- -UGCGGUUcCUUCA----CgCGG--UGCGG-GCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23468 | 0.7 | 0.214961 |
Target: 5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3' miRNA: 3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23764 | 0.69 | 0.287948 |
Target: 5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3' miRNA: 3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23890 | 1.11 | 0.000188 |
Target: 5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3' miRNA: 3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5' |
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26758 | 5' | -59.5 | NC_005808.1 | + | 23938 | 0.72 | 0.169085 |
Target: 5'- -gGCCGGGGgcGgGCGCCGCcCCCGa -3' miRNA: 3'- ugCGGUUCCuuCaCGCGGUGcGGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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