miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 349 0.66 0.436132
Target:  5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3'
miRNA:   3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 357 0.7 0.214961
Target:  5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3'
miRNA:   3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 590 0.67 0.346655
Target:  5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3'
miRNA:   3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 1358 0.71 0.188285
Target:  5'- cCGCCAaaGGGAuggugacauAGgGCGCCGCGgCCaCGCg -3'
miRNA:   3'- uGCGGU--UCCU---------UCaCGCGGUGC-GG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 4570 0.7 0.238578
Target:  5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3'
miRNA:   3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 5753 0.73 0.145153
Target:  5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3'
miRNA:   3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 5808 0.67 0.35499
Target:  5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3'
miRNA:   3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5'
26758 5' -59.5 NC_005808.1 + 6295 0.66 0.389717
Target:  5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3'
miRNA:   3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 6463 0.68 0.292285
Target:  5'- uCGCCGucgcgcAGGAAcUGCacGCCGCgcagGCCCGCa -3'
miRNA:   3'- uGCGGU------UCCUUcACG--CGGUG----CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 6661 0.67 0.363464
Target:  5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3'
miRNA:   3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5'
26758 5' -59.5 NC_005808.1 + 6972 0.68 0.314734
Target:  5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3'
miRNA:   3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 8173 0.7 0.244812
Target:  5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3'
miRNA:   3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 8295 0.7 0.238578
Target:  5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3'
miRNA:   3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 8686 0.74 0.118275
Target:  5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3'
miRNA:   3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5'
26758 5' -59.5 NC_005808.1 + 10468 0.67 0.338462
Target:  5'- uCGCCcuGGAAGUcGCGCagCACcgGCCCGa -3'
miRNA:   3'- uGCGGuuCCUUCA-CGCG--GUG--CGGGCg -5'
26758 5' -59.5 NC_005808.1 + 10750 0.69 0.271107
Target:  5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3'
miRNA:   3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 12715 0.7 0.238578
Target:  5'- cAUGCCGGGGggGgggugGUGCUAgaccCGUUCGCa -3'
miRNA:   3'- -UGCGGUUCCuuCa----CGCGGU----GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 13189 0.66 0.389717
Target:  5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3'
miRNA:   3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 13726 0.66 0.41718
Target:  5'- uACGCCAgcagcgAGGAcGUgGCGCgGCGCUgGg -3'
miRNA:   3'- -UGCGGU------UCCUuCA-CGCGgUGCGGgCg -5'
26758 5' -59.5 NC_005808.1 + 14399 0.66 0.389717
Target:  5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3'
miRNA:   3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.