miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 23890 1.11 0.000188
Target:  5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3'
miRNA:   3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 28381 0.86 0.015601
Target:  5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3'
miRNA:   3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 35165 0.83 0.026488
Target:  5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3'
miRNA:   3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 42375 0.78 0.059826
Target:  5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3'
miRNA:   3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 15176 0.78 0.061573
Target:  5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3'
miRNA:   3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 42450 0.76 0.079682
Target:  5'- cCGCCugcgGGGAAGccugGCGCCACGCCguaGCu -3'
miRNA:   3'- uGCGGu---UCCUUCa---CGCGGUGCGGg--CG- -5'
26758 5' -59.5 NC_005808.1 + 33384 0.76 0.081984
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26758 5' -59.5 NC_005808.1 + 36965 0.75 0.102817
Target:  5'- -aGCCAccAGcAAGcUGCGCCGCGCCaCGCg -3'
miRNA:   3'- ugCGGU--UCcUUC-ACGCGGUGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 20749 0.75 0.102817
Target:  5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3'
miRNA:   3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 24655 0.75 0.108758
Target:  5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3'
miRNA:   3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 8686 0.74 0.118275
Target:  5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3'
miRNA:   3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5'
26758 5' -59.5 NC_005808.1 + 37438 0.74 0.128563
Target:  5'- uCGCCAAGGgcGUGagcaGCgACGgCCGCc -3'
miRNA:   3'- uGCGGUUCCuuCACg---CGgUGCgGGCG- -5'
26758 5' -59.5 NC_005808.1 + 16053 0.73 0.139673
Target:  5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3'
miRNA:   3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 33922 0.73 0.143568
Target:  5'- aACGCCGAGGucGcGCGgCACGCaaugccgaCCGCg -3'
miRNA:   3'- -UGCGGUUCCuuCaCGCgGUGCG--------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 5753 0.73 0.145153
Target:  5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3'
miRNA:   3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 14792 0.72 0.155854
Target:  5'- cGCGCgCGAGGAcgugcugcGGcUGCGCgGCGCgCGCu -3'
miRNA:   3'- -UGCG-GUUCCU--------UC-ACGCGgUGCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 16541 0.72 0.164567
Target:  5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3'
miRNA:   3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 23938 0.72 0.169085
Target:  5'- -gGCCGGGGgcGgGCGCCGCcCCCGa -3'
miRNA:   3'- ugCGGUUCCuuCaCGCGGUGcGGGCg -5'
26758 5' -59.5 NC_005808.1 + 33844 0.71 0.187783
Target:  5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3'
miRNA:   3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 1358 0.71 0.188285
Target:  5'- cCGCCAaaGGGAuggugacauAGgGCGCCGCGgCCaCGCg -3'
miRNA:   3'- uGCGGU--UCCU---------UCaCGCGGUGC-GG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.