Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26759 | 5' | -68 | NC_005808.1 | + | 32585 | 0.69 | 0.089585 |
Target: 5'- uACCaGgGCGGGGgC-CGGGCgcgcggcacuuucgACCCCGCc -3' miRNA: 3'- -UGG-CgCGCCCC-GuGCCCG--------------UGGGGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 38876 | 0.7 | 0.072789 |
Target: 5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3' miRNA: 3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 5624 | 0.71 | 0.063548 |
Target: 5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3' miRNA: 3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 8293 | 0.66 | 0.141611 |
Target: 5'- cGCUGC-CGGGGCagugcagccaGCGGuGCGCgCUGCUc -3' miRNA: 3'- -UGGCGcGCCCCG----------UGCC-CGUGgGGCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 14763 | 0.67 | 0.124237 |
Target: 5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3' miRNA: 3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 15858 | 0.68 | 0.114783 |
Target: 5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3' miRNA: 3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 12569 | 0.66 | 0.165378 |
Target: 5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3' miRNA: 3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 24892 | 0.66 | 0.153077 |
Target: 5'- uGCCGCGauGGGCAUuucccggcccgaGuGGCGCUUCGCc -3' miRNA: 3'- -UGGCGCgcCCCGUG------------C-CCGUGGGGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 23737 | 0.66 | 0.141611 |
Target: 5'- cCCGaaCGuGGGCAUGGGcCGCCCgGCc -3' miRNA: 3'- uGGCgcGC-CCCGUGCCC-GUGGGgCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 20086 | 0.67 | 0.130936 |
Target: 5'- uGCuCGCuGCGGGGaugaugGCGGGCAUgaccagcccagCCCGCc -3' miRNA: 3'- -UG-GCG-CGCCCCg-----UGCCCGUG-----------GGGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 13219 | 0.69 | 0.095279 |
Target: 5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3' miRNA: 3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 34491 | 0.66 | 0.153077 |
Target: 5'- gGCCGCGCGGuGCA-GGGCcUCaaaCGCUu -3' miRNA: 3'- -UGGCGCGCCcCGUgCCCGuGGg--GCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 18168 | 0.69 | 0.095279 |
Target: 5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3' miRNA: 3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 18498 | 0.66 | 0.141611 |
Target: 5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3' miRNA: 3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 23922 | 0.66 | 0.157082 |
Target: 5'- cCCGCGUGGuguaacaggccgGGgGCGGGCGccgcCCCCGa- -3' miRNA: 3'- uGGCGCGCC------------CCgUGCCCGU----GGGGCga -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 15174 | 0.68 | 0.114783 |
Target: 5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3' miRNA: 3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 13014 | 0.69 | 0.087917 |
Target: 5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3' miRNA: 3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 8120 | 0.67 | 0.135822 |
Target: 5'- cACCGCGCGgccggcguugguuguGGGCguGCGGGUGucggcgcugcguCCCUGCg -3' miRNA: 3'- -UGGCGCGC---------------CCCG--UGCCCGU------------GGGGCGa -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 3740 | 0.67 | 0.134409 |
Target: 5'- cGCCG-GUGguGGGCACGucGGUGCCgCCGCUg -3' miRNA: 3'- -UGGCgCGC--CCCGUGC--CCGUGG-GGCGA- -5' |
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26759 | 5' | -68 | NC_005808.1 | + | 39512 | 0.67 | 0.130936 |
Target: 5'- uGCCGCGUGucgaaGGGCAUGGGUgcgGCUCgggCGCUu -3' miRNA: 3'- -UGGCGCGC-----CCCGUGCCCG---UGGG---GCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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