miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26759 5' -68 NC_005808.1 + 18498 0.66 0.141611
Target:  5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3'
miRNA:   3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5'
26759 5' -68 NC_005808.1 + 23737 0.66 0.141611
Target:  5'- cCCGaaCGuGGGCAUGGGcCGCCCgGCc -3'
miRNA:   3'- uGGCgcGC-CCCGUGCCC-GUGGGgCGa -5'
26759 5' -68 NC_005808.1 + 24892 0.66 0.153077
Target:  5'- uGCCGCGauGGGCAUuucccggcccgaGuGGCGCUUCGCc -3'
miRNA:   3'- -UGGCGCgcCCCGUG------------C-CCGUGGGGCGa -5'
26759 5' -68 NC_005808.1 + 34491 0.66 0.153077
Target:  5'- gGCCGCGCGGuGCA-GGGCcUCaaaCGCUu -3'
miRNA:   3'- -UGGCGCGCCcCGUgCCCGuGGg--GCGA- -5'
26759 5' -68 NC_005808.1 + 23922 0.66 0.157082
Target:  5'- cCCGCGUGGuguaacaggccgGGgGCGGGCGccgcCCCCGa- -3'
miRNA:   3'- uGGCGCGCC------------CCgUGCCCGU----GGGGCga -5'
26759 5' -68 NC_005808.1 + 14763 0.67 0.124237
Target:  5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3'
miRNA:   3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5'
26759 5' -68 NC_005808.1 + 15858 0.68 0.114783
Target:  5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3'
miRNA:   3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5'
26759 5' -68 NC_005808.1 + 15174 0.68 0.114783
Target:  5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3'
miRNA:   3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5'
26759 5' -68 NC_005808.1 + 18168 0.69 0.095279
Target:  5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3'
miRNA:   3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5'
26759 5' -68 NC_005808.1 + 13219 0.69 0.095279
Target:  5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3'
miRNA:   3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5'
26759 5' -68 NC_005808.1 + 32585 0.69 0.089585
Target:  5'- uACCaGgGCGGGGgC-CGGGCgcgcggcacuuucgACCCCGCc -3'
miRNA:   3'- -UGG-CgCGCCCC-GuGCCCG--------------UGGGGCGa -5'
26759 5' -68 NC_005808.1 + 13014 0.69 0.087917
Target:  5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3'
miRNA:   3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5'
26759 5' -68 NC_005808.1 + 38876 0.7 0.072789
Target:  5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3'
miRNA:   3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5'
26759 5' -68 NC_005808.1 + 5624 0.71 0.063548
Target:  5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3'
miRNA:   3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5'
26759 5' -68 NC_005808.1 + 12569 0.66 0.165378
Target:  5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3'
miRNA:   3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.