Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26765 | 3' | -54.1 | NC_005808.1 | + | 27925 | 1.02 | 0.0031 |
Target: 5'- aGCACCGUGGACUUACCGUU-CUGCCCg -3' miRNA: 3'- -CGUGGCACCUGAAUGGCAAcGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 15155 | 0.66 | 0.734158 |
Target: 5'- uGCGCCcaGGGCgacgGCUGaUGUUGCUCc -3' miRNA: 3'- -CGUGGcaCCUGaa--UGGCaACGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 3870 | 0.66 | 0.734158 |
Target: 5'- gGCGCCGUc-GCUguagGCCGc-GCUGCCg -3' miRNA: 3'- -CGUGGCAccUGAa---UGGCaaCGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 5474 | 0.66 | 0.720068 |
Target: 5'- gGCGgCGaGGugUUGCCGaUgggggguacggcgaUGCUGCCa -3' miRNA: 3'- -CGUgGCaCCugAAUGGC-A--------------ACGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 22750 | 0.67 | 0.645588 |
Target: 5'- aGCAgaGUGGACUUGCCcaggGUgaggGCCg -3' miRNA: 3'- -CGUggCACCUGAAUGGcaa-CGa---CGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 32519 | 0.67 | 0.634339 |
Target: 5'- cGCGCCcGUGcaGGCUggugaUGCCGgccaggaUGCUGCCg -3' miRNA: 3'- -CGUGG-CAC--CUGA-----AUGGCa------ACGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 29933 | 0.67 | 0.634339 |
Target: 5'- aGUGCCGUGG-CUUGCCaGUcaggUGgUGCUUg -3' miRNA: 3'- -CGUGGCACCuGAAUGG-CA----ACgACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 34596 | 0.68 | 0.600621 |
Target: 5'- gGCGCCaaGGGCacguccgacGCCGUggugcUGCUGCCUg -3' miRNA: 3'- -CGUGGcaCCUGaa-------UGGCA-----ACGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 13941 | 0.68 | 0.589425 |
Target: 5'- aGCGCCGUGGACUgga------UGCCCu -3' miRNA: 3'- -CGUGGCACCUGAauggcaacgACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 19151 | 0.68 | 0.567155 |
Target: 5'- aCACCGUcagccagauGGAUgcGuuGUcGCUGCCCg -3' miRNA: 3'- cGUGGCA---------CCUGaaUggCAaCGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 28824 | 0.82 | 0.089465 |
Target: 5'- cGCGCCGUcgucggguugcggccGGACUUGCCGaaGCUGUCCc -3' miRNA: 3'- -CGUGGCA---------------CCUGAAUGGCaaCGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 19725 | 0.81 | 0.101381 |
Target: 5'- gGCGCCGcgcaucgcccugcuUGGGCUgguUGCCGUUGUUGCCg -3' miRNA: 3'- -CGUGGC--------------ACCUGA---AUGGCAACGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 4098 | 0.75 | 0.265782 |
Target: 5'- uGCGCCGUGGugUUuccGCCagccugcgcugcagcGUUGCUuCCCg -3' miRNA: 3'- -CGUGGCACCugAA---UGG---------------CAACGAcGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 624 | 0.74 | 0.269972 |
Target: 5'- aGCGCCGUGGACacggcguCCGgcGUcgagucggUGCCCa -3' miRNA: 3'- -CGUGGCACCUGaau----GGCaaCG--------ACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 40226 | 0.7 | 0.491345 |
Target: 5'- -uGCCGUGcGcCUcgaACCGUUGCcguuUGCCCa -3' miRNA: 3'- cgUGGCAC-CuGAa--UGGCAACG----ACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 1707 | 0.69 | 0.512579 |
Target: 5'- uCGCCGUGGGCcggcgUGCCGgcgaggGC-GUCCa -3' miRNA: 3'- cGUGGCACCUGa----AUGGCaa----CGaCGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 12067 | 0.68 | 0.567155 |
Target: 5'- gGCGCCGaUGGugUccUGCCGUUucGCUuCCUu -3' miRNA: 3'- -CGUGGC-ACCugA--AUGGCAA--CGAcGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 27073 | 0.66 | 0.723334 |
Target: 5'- gGCACCGUGca--UAUCGgc-CUGCCCa -3' miRNA: 3'- -CGUGGCACcugaAUGGCaacGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 19498 | 0.68 | 0.567155 |
Target: 5'- uCGCCGUGGGCgccGCCGUUGgC-GUCg -3' miRNA: 3'- cGUGGCACCUGaa-UGGCAAC-GaCGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 35395 | 0.68 | 0.567155 |
Target: 5'- uGCuGCCGUGGAC--AUCGc-GCUGUCCc -3' miRNA: 3'- -CG-UGGCACCUGaaUGGCaaCGACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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