miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26766 5' -49.9 NC_005808.1 + 6206 0.66 0.923656
Target:  5'- aGGugACGGCGCGcgGCUccUGGu---- -3'
miRNA:   3'- cCCugUGCCGCGCuuUGA--ACUucuug -5'
26766 5' -49.9 NC_005808.1 + 35484 0.66 0.923656
Target:  5'- cGGACGUGaGCGgGGAAaccgUGGAGGACu -3'
miRNA:   3'- cCCUGUGC-CGCgCUUUga--ACUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 16418 0.66 0.923656
Target:  5'- aGGACACGGCcGCGGgguaaucgccGGCggcGuuGAACa -3'
miRNA:   3'- cCCUGUGCCG-CGCU----------UUGaa-CuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 30683 0.66 0.922411
Target:  5'- uGGGCACGGCGgUGAAguaucuggucaGCgcacccgaccaGAAGAACa -3'
miRNA:   3'- cCCUGUGCCGC-GCUU-----------UGaa---------CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 39149 0.66 0.91731
Target:  5'- gGGGcGCGCGGCGUcugugaccaccuGAuuCUUGAGuAGCg -3'
miRNA:   3'- -CCC-UGUGCCGCG------------CUuuGAACUUcUUG- -5'
26766 5' -49.9 NC_005808.1 + 33960 0.66 0.910658
Target:  5'- -cGGCGCGGCcUGggGCguuuccGAAGGGCg -3'
miRNA:   3'- ccCUGUGCCGcGCuuUGaa----CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 21298 0.66 0.910658
Target:  5'- cGGu--CGGCGUcGAACUUGucGAGCa -3'
miRNA:   3'- cCCuguGCCGCGcUUUGAACuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 21955 0.66 0.910658
Target:  5'- cGGGGCACaGuGCGCGGAACgaccGAuagccGGAuucGCg -3'
miRNA:   3'- -CCCUGUG-C-CGCGCUUUGaa--CU-----UCU---UG- -5'
26766 5' -49.9 NC_005808.1 + 18054 0.66 0.903703
Target:  5'- gGGGGCcuuacCGGCGCGGggUgcgUGcuGGGCc -3'
miRNA:   3'- -CCCUGu----GCCGCGCUuuGa--ACuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 13465 0.67 0.888895
Target:  5'- cGGGCGCGGUGUcGGGCaUGAccuGGGCg -3'
miRNA:   3'- cCCUGUGCCGCGcUUUGaACUu--CUUG- -5'
26766 5' -49.9 NC_005808.1 + 244 0.67 0.881054
Target:  5'- aGGGCcgGCGGUaGCGAAuccccaggcGCUUGAGGcACg -3'
miRNA:   3'- cCCUG--UGCCG-CGCUU---------UGAACUUCuUG- -5'
26766 5' -49.9 NC_005808.1 + 8299 0.67 0.881054
Target:  5'- cGGGGCagugcagccaGCGGUGCGcgcuGCUcGggGAAa -3'
miRNA:   3'- -CCCUG----------UGCCGCGCuu--UGAaCuuCUUg -5'
26766 5' -49.9 NC_005808.1 + 6077 0.67 0.880253
Target:  5'- aGGGAUACGGCcccGCGAcccGAUcugugcuUUGGAcGGACa -3'
miRNA:   3'- -CCCUGUGCCG---CGCU---UUG-------AACUU-CUUG- -5'
26766 5' -49.9 NC_005808.1 + 41308 0.67 0.880253
Target:  5'- uGGGCGCGGCgguguggGCGGgcaucaccucgaAACUUGggGGc- -3'
miRNA:   3'- cCCUGUGCCG-------CGCU------------UUGAACuuCUug -5'
26766 5' -49.9 NC_005808.1 + 18584 0.67 0.872927
Target:  5'- cGGugACGGCcuggccgucCGAGACUUGGAGc-- -3'
miRNA:   3'- cCCugUGCCGc--------GCUUUGAACUUCuug -5'
26766 5' -49.9 NC_005808.1 + 13240 0.67 0.863669
Target:  5'- uGGGGCAaggccacCGGCGCGugguucgaGGACUUGGccGGCg -3'
miRNA:   3'- -CCCUGU-------GCCGCGC--------UUUGAACUucUUG- -5'
26766 5' -49.9 NC_005808.1 + 35960 0.67 0.855852
Target:  5'- cGGACACuccggccaaGcGCGCGAAGCUggcGgcGGACu -3'
miRNA:   3'- cCCUGUG---------C-CGCGCUUUGAa--CuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 35376 0.67 0.855852
Target:  5'- aGGGugaGCGCGGCGCaGAuGCUgccguGGACa -3'
miRNA:   3'- -CCC---UGUGCCGCG-CUuUGAacuu-CUUG- -5'
26766 5' -49.9 NC_005808.1 + 19438 0.68 0.84692
Target:  5'- --uGCACGGUGCGGGACUUcucGGGCu -3'
miRNA:   3'- cccUGUGCCGCGCUUUGAAcuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 15180 0.68 0.81474
Target:  5'- cGGGCGCGGUGCGccaggcgcgcgacGACUacAAGAGCg -3'
miRNA:   3'- cCCUGUGCCGCGCu------------UUGAacUUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.