Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 244 | 0.67 | 0.881054 |
Target: 5'- aGGGCcgGCGGUaGCGAAuccccaggcGCUUGAGGcACg -3' miRNA: 3'- cCCUG--UGCCG-CGCUU---------UGAACUUCuUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 6077 | 0.67 | 0.880253 |
Target: 5'- aGGGAUACGGCcccGCGAcccGAUcugugcuUUGGAcGGACa -3' miRNA: 3'- -CCCUGUGCCG---CGCU---UUG-------AACUU-CUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 6206 | 0.66 | 0.923656 |
Target: 5'- aGGugACGGCGCGcgGCUccUGGu---- -3' miRNA: 3'- cCCugUGCCGCGCuuUGA--ACUucuug -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 6815 | 0.71 | 0.654912 |
Target: 5'- aGGGACACGGCGCGGGu---------- -3' miRNA: 3'- -CCCUGUGCCGCGCUUugaacuucuug -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 8299 | 0.67 | 0.881054 |
Target: 5'- cGGGGCagugcagccaGCGGUGCGcgcuGCUcGggGAAa -3' miRNA: 3'- -CCCUG----------UGCCGCGCuu--UGAaCuuCUUg -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 9944 | 0.71 | 0.678003 |
Target: 5'- cGGGcagcuuCGCGGCGCcGAACUUcGAcAGGACa -3' miRNA: 3'- -CCCu-----GUGCCGCGcUUUGAA-CU-UCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 12575 | 0.69 | 0.777999 |
Target: 5'- uGGGGCACcaagGGCGCGGccguGCagUUGGAGcACg -3' miRNA: 3'- -CCCUGUG----CCGCGCUu---UG--AACUUCuUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 13240 | 0.67 | 0.863669 |
Target: 5'- uGGGGCAaggccacCGGCGCGugguucgaGGACUUGGccGGCg -3' miRNA: 3'- -CCCUGU-------GCCGCGC--------UUUGAACUucUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 13465 | 0.67 | 0.888895 |
Target: 5'- cGGGCGCGGUGUcGGGCaUGAccuGGGCg -3' miRNA: 3'- cCCUGUGCCGCGcUUUGaACUu--CUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 13739 | 0.7 | 0.700901 |
Target: 5'- aGGACGUGGCGCGgcGCU---GGGACa -3' miRNA: 3'- cCCUGUGCCGCGCuuUGAacuUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 15180 | 0.68 | 0.81474 |
Target: 5'- cGGGCGCGGUGCGccaggcgcgcgacGACUacAAGAGCg -3' miRNA: 3'- cCCUGUGCCGCGCu------------UUGAacUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 16418 | 0.66 | 0.923656 |
Target: 5'- aGGACACGGCcGCGGgguaaucgccGGCggcGuuGAACa -3' miRNA: 3'- cCCUGUGCCG-CGCU----------UUGaa-CuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18054 | 0.66 | 0.903703 |
Target: 5'- gGGGGCcuuacCGGCGCGGggUgcgUGcuGGGCc -3' miRNA: 3'- -CCCUGu----GCCGCGCUuuGa--ACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18317 | 0.68 | 0.808793 |
Target: 5'- -aGACACGGCaguaGCGGcgcAGCUUGguGGGCa -3' miRNA: 3'- ccCUGUGCCG----CGCU---UUGAACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18584 | 0.67 | 0.872927 |
Target: 5'- cGGugACGGCcuggccgucCGAGACUUGGAGc-- -3' miRNA: 3'- cCCugUGCCGc--------GCUUUGAACUUCuug -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 19438 | 0.68 | 0.84692 |
Target: 5'- --uGCACGGUGCGGGACUUcucGGGCu -3' miRNA: 3'- cccUGUGCCGCGCUUUGAAcuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 21298 | 0.66 | 0.910658 |
Target: 5'- cGGu--CGGCGUcGAACUUGucGAGCa -3' miRNA: 3'- cCCuguGCCGCGcUUUGAACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 21955 | 0.66 | 0.910658 |
Target: 5'- cGGGGCACaGuGCGCGGAACgaccGAuagccGGAuucGCg -3' miRNA: 3'- -CCCUGUG-C-CGCGCUUUGaa--CU-----UCU---UG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 27004 | 0.81 | 0.208807 |
Target: 5'- uGGGGCuacaGCGGCGCGGAuauguACcgUGAAGGACa -3' miRNA: 3'- -CCCUG----UGCCGCGCUU-----UGa-ACUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 28290 | 1.02 | 0.009061 |
Target: 5'- uGGGACACGGCGCaGAACUUGAAGAACu -3' miRNA: 3'- -CCCUGUGCCGCGcUUUGAACUUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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