Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 41800 | 0.71 | 0.653754 |
Target: 5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3' miRNA: 3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 41308 | 0.67 | 0.880253 |
Target: 5'- uGGGCGCGGCgguguggGCGGgcaucaccucgaAACUUGggGGc- -3' miRNA: 3'- cCCUGUGCCG-------CGCU------------UUGAACuuCUug -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 39149 | 0.66 | 0.91731 |
Target: 5'- gGGGcGCGCGGCGUcugugaccaccuGAuuCUUGAGuAGCg -3' miRNA: 3'- -CCC-UGUGCCGCG------------CUuuGAACUUcUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 36446 | 0.7 | 0.723501 |
Target: 5'- uGGGAagaugACGGCgGCGAGuggguGCUgaugGAAGGGCa -3' miRNA: 3'- -CCCUg----UGCCG-CGCUU-----UGAa---CUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 35960 | 0.67 | 0.855852 |
Target: 5'- cGGACACuccggccaaGcGCGCGAAGCUggcGgcGGACu -3' miRNA: 3'- cCCUGUG---------C-CGCGCUUUGAa--CuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 35484 | 0.66 | 0.923656 |
Target: 5'- cGGACGUGaGCGgGGAAaccgUGGAGGACu -3' miRNA: 3'- cCCUGUGC-CGCgCUUUga--ACUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 35376 | 0.67 | 0.855852 |
Target: 5'- aGGGugaGCGCGGCGCaGAuGCUgccguGGACa -3' miRNA: 3'- -CCC---UGUGCCGCG-CUuUGAacuu-CUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 34378 | 0.69 | 0.774831 |
Target: 5'- aGGGCACGGcCGCGcacGAACUggccgccaugucgcUGAcGAACg -3' miRNA: 3'- cCCUGUGCC-GCGC---UUUGA--------------ACUuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 33960 | 0.66 | 0.910658 |
Target: 5'- -cGGCGCGGCcUGggGCguuuccGAAGGGCg -3' miRNA: 3'- ccCUGUGCCGcGCuuUGaa----CUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 32405 | 0.71 | 0.643326 |
Target: 5'- cGGGC-CGGCGUGc-GCUUGAcguGGGACg -3' miRNA: 3'- cCCUGuGCCGCGCuuUGAACU---UCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 30683 | 0.66 | 0.922411 |
Target: 5'- uGGGCACGGCGgUGAAguaucuggucaGCgcacccgaccaGAAGAACa -3' miRNA: 3'- cCCUGUGCCGC-GCUU-----------UGaa---------CUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 28290 | 1.02 | 0.009061 |
Target: 5'- uGGGACACGGCGCaGAACUUGAAGAACu -3' miRNA: 3'- -CCCUGUGCCGCGcUUUGAACUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 27004 | 0.81 | 0.208807 |
Target: 5'- uGGGGCuacaGCGGCGCGGAuauguACcgUGAAGGACa -3' miRNA: 3'- -CCCUG----UGCCGCGCUU-----UGa-ACUUCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 21955 | 0.66 | 0.910658 |
Target: 5'- cGGGGCACaGuGCGCGGAACgaccGAuagccGGAuucGCg -3' miRNA: 3'- -CCCUGUG-C-CGCGCUUUGaa--CU-----UCU---UG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 21298 | 0.66 | 0.910658 |
Target: 5'- cGGu--CGGCGUcGAACUUGucGAGCa -3' miRNA: 3'- cCCuguGCCGCGcUUUGAACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 19438 | 0.68 | 0.84692 |
Target: 5'- --uGCACGGUGCGGGACUUcucGGGCu -3' miRNA: 3'- cccUGUGCCGCGCUUUGAAcuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18584 | 0.67 | 0.872927 |
Target: 5'- cGGugACGGCcuggccgucCGAGACUUGGAGc-- -3' miRNA: 3'- cCCugUGCCGc--------GCUUUGAACUUCuug -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18317 | 0.68 | 0.808793 |
Target: 5'- -aGACACGGCaguaGCGGcgcAGCUUGguGGGCa -3' miRNA: 3'- ccCUGUGCCG----CGCU---UUGAACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 18054 | 0.66 | 0.903703 |
Target: 5'- gGGGGCcuuacCGGCGCGGggUgcgUGcuGGGCc -3' miRNA: 3'- -CCCUGu----GCCGCGCUuuGa--ACuuCUUG- -5' |
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26766 | 5' | -49.9 | NC_005808.1 | + | 16418 | 0.66 | 0.923656 |
Target: 5'- aGGACACGGCcGCGGgguaaucgccGGCggcGuuGAACa -3' miRNA: 3'- cCCUGUGCCG-CGCU----------UUGaa-CuuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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