miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26766 5' -49.9 NC_005808.1 + 30683 0.66 0.922411
Target:  5'- uGGGCACGGCGgUGAAguaucuggucaGCgcacccgaccaGAAGAACa -3'
miRNA:   3'- cCCUGUGCCGC-GCUU-----------UGaa---------CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 32405 0.71 0.643326
Target:  5'- cGGGC-CGGCGUGc-GCUUGAcguGGGACg -3'
miRNA:   3'- cCCUGuGCCGCGCuuUGAACU---UCUUG- -5'
26766 5' -49.9 NC_005808.1 + 33960 0.66 0.910658
Target:  5'- -cGGCGCGGCcUGggGCguuuccGAAGGGCg -3'
miRNA:   3'- ccCUGUGCCGcGCuuUGaa----CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 34378 0.69 0.774831
Target:  5'- aGGGCACGGcCGCGcacGAACUggccgccaugucgcUGAcGAACg -3'
miRNA:   3'- cCCUGUGCC-GCGC---UUUGA--------------ACUuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 35376 0.67 0.855852
Target:  5'- aGGGugaGCGCGGCGCaGAuGCUgccguGGACa -3'
miRNA:   3'- -CCC---UGUGCCGCG-CUuUGAacuu-CUUG- -5'
26766 5' -49.9 NC_005808.1 + 35484 0.66 0.923656
Target:  5'- cGGACGUGaGCGgGGAAaccgUGGAGGACu -3'
miRNA:   3'- cCCUGUGC-CGCgCUUUga--ACUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 35960 0.67 0.855852
Target:  5'- cGGACACuccggccaaGcGCGCGAAGCUggcGgcGGACu -3'
miRNA:   3'- cCCUGUG---------C-CGCGCUUUGAa--CuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 36446 0.7 0.723501
Target:  5'- uGGGAagaugACGGCgGCGAGuggguGCUgaugGAAGGGCa -3'
miRNA:   3'- -CCCUg----UGCCG-CGCUU-----UGAa---CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 39149 0.66 0.91731
Target:  5'- gGGGcGCGCGGCGUcugugaccaccuGAuuCUUGAGuAGCg -3'
miRNA:   3'- -CCC-UGUGCCGCG------------CUuuGAACUUcUUG- -5'
26766 5' -49.9 NC_005808.1 + 41308 0.67 0.880253
Target:  5'- uGGGCGCGGCgguguggGCGGgcaucaccucgaAACUUGggGGc- -3'
miRNA:   3'- cCCUGUGCCG-------CGCU------------UUGAACuuCUug -5'
26766 5' -49.9 NC_005808.1 + 41800 0.71 0.653754
Target:  5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3'
miRNA:   3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.