miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26766 5' -49.9 NC_005808.1 + 39149 0.66 0.91731
Target:  5'- gGGGcGCGCGGCGUcugugaccaccuGAuuCUUGAGuAGCg -3'
miRNA:   3'- -CCC-UGUGCCGCG------------CUuuGAACUUcUUG- -5'
26766 5' -49.9 NC_005808.1 + 30683 0.66 0.922411
Target:  5'- uGGGCACGGCGgUGAAguaucuggucaGCgcacccgaccaGAAGAACa -3'
miRNA:   3'- cCCUGUGCCGC-GCUU-----------UGaa---------CUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 35960 0.67 0.855852
Target:  5'- cGGACACuccggccaaGcGCGCGAAGCUggcGgcGGACu -3'
miRNA:   3'- cCCUGUG---------C-CGCGCUUUGAa--CuuCUUG- -5'
26766 5' -49.9 NC_005808.1 + 35376 0.67 0.855852
Target:  5'- aGGGugaGCGCGGCGCaGAuGCUgccguGGACa -3'
miRNA:   3'- -CCC---UGUGCCGCG-CUuUGAacuu-CUUG- -5'
26766 5' -49.9 NC_005808.1 + 15180 0.68 0.81474
Target:  5'- cGGGCGCGGUGCGccaggcgcgcgacGACUacAAGAGCg -3'
miRNA:   3'- cCCUGUGCCGCGCu------------UUGAacUUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 12575 0.69 0.777999
Target:  5'- uGGGGCACcaagGGCGCGGccguGCagUUGGAGcACg -3'
miRNA:   3'- -CCCUGUG----CCGCGCUu---UG--AACUUCuUG- -5'
26766 5' -49.9 NC_005808.1 + 13739 0.7 0.700901
Target:  5'- aGGACGUGGCGCGgcGCU---GGGACa -3'
miRNA:   3'- cCCUGUGCCGCGCuuUGAacuUCUUG- -5'
26766 5' -49.9 NC_005808.1 + 9944 0.71 0.678003
Target:  5'- cGGGcagcuuCGCGGCGCcGAACUUcGAcAGGACa -3'
miRNA:   3'- -CCCu-----GUGCCGCGcUUUGAA-CU-UCUUG- -5'
26766 5' -49.9 NC_005808.1 + 41800 0.71 0.653754
Target:  5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3'
miRNA:   3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5'
26766 5' -49.9 NC_005808.1 + 32405 0.71 0.643326
Target:  5'- cGGGC-CGGCGUGc-GCUUGAcguGGGACg -3'
miRNA:   3'- cCCUGuGCCGCGCuuUGAACU---UCUUG- -5'
26766 5' -49.9 NC_005808.1 + 6206 0.66 0.923656
Target:  5'- aGGugACGGCGCGcgGCUccUGGu---- -3'
miRNA:   3'- cCCugUGCCGCGCuuUGA--ACUucuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.