Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 15180 | 0.68 | 0.81474 |
Target: 5'- cGGGCGCGGUGCGccaggcgcgcgacGACUacAAGAGCg -3' miRNA: 3'- cCCUGUGCCGCGCu------------UUGAacUUCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 13739 | 0.7 | 0.700901 |
Target: 5'- aGGACGUGGCGCGgcGCU---GGGACa -3' miRNA: 3'- cCCUGUGCCGCGCuuUGAacuUCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 9944 | 0.71 | 0.678003 |
Target: 5'- cGGGcagcuuCGCGGCGCcGAACUUcGAcAGGACa -3' miRNA: 3'- -CCCu-----GUGCCGCGcUUUGAA-CU-UCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 41800 | 0.71 | 0.653754 |
Target: 5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3' miRNA: 3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 32405 | 0.71 | 0.643326 |
Target: 5'- cGGGC-CGGCGUGc-GCUUGAcguGGGACg -3' miRNA: 3'- cCCUGuGCCGCGCuuUGAACU---UCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 41308 | 0.67 | 0.880253 |
Target: 5'- uGGGCGCGGCgguguggGCGGgcaucaccucgaAACUUGggGGc- -3' miRNA: 3'- cCCUGUGCCG-------CGCU------------UUGAACuuCUug -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 30683 | 0.66 | 0.922411 |
Target: 5'- uGGGCACGGCGgUGAAguaucuggucaGCgcacccgaccaGAAGAACa -3' miRNA: 3'- cCCUGUGCCGC-GCUU-----------UGaa---------CUUCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 39149 | 0.66 | 0.91731 |
Target: 5'- gGGGcGCGCGGCGUcugugaccaccuGAuuCUUGAGuAGCg -3' miRNA: 3'- -CCC-UGUGCCGCG------------CUuuGAACUUcUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 8299 | 0.67 | 0.881054 |
Target: 5'- cGGGGCagugcagccaGCGGUGCGcgcuGCUcGggGAAa -3' miRNA: 3'- -CCCUG----------UGCCGCGCuu--UGAaCuuCUUg -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 13240 | 0.67 | 0.863669 |
Target: 5'- uGGGGCAaggccacCGGCGCGugguucgaGGACUUGGccGGCg -3' miRNA: 3'- -CCCUGU-------GCCGCGC--------UUUGAACUucUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 35376 | 0.67 | 0.855852 |
Target: 5'- aGGGugaGCGCGGCGCaGAuGCUgccguGGACa -3' miRNA: 3'- -CCC---UGUGCCGCG-CUuUGAacuu-CUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 6206 | 0.66 | 0.923656 |
Target: 5'- aGGugACGGCGCGcgGCUccUGGu---- -3' miRNA: 3'- cCCugUGCCGCGCuuUGA--ACUucuug -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 35960 | 0.67 | 0.855852 |
Target: 5'- cGGACACuccggccaaGcGCGCGAAGCUggcGgcGGACu -3' miRNA: 3'- cCCUGUG---------C-CGCGCUUUGAa--CuuCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 244 | 0.67 | 0.881054 |
Target: 5'- aGGGCcgGCGGUaGCGAAuccccaggcGCUUGAGGcACg -3' miRNA: 3'- cCCUG--UGCCG-CGCUU---------UGAACUUCuUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 12575 | 0.69 | 0.777999 |
Target: 5'- uGGGGCACcaagGGCGCGGccguGCagUUGGAGcACg -3' miRNA: 3'- -CCCUGUG----CCGCGCUu---UG--AACUUCuUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 16418 | 0.66 | 0.923656 |
Target: 5'- aGGACACGGCcGCGGgguaaucgccGGCggcGuuGAACa -3' miRNA: 3'- cCCUGUGCCG-CGCU----------UUGaa-CuuCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 33960 | 0.66 | 0.910658 |
Target: 5'- -cGGCGCGGCcUGggGCguuuccGAAGGGCg -3' miRNA: 3'- ccCUGUGCCGcGCuuUGaa----CUUCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 21298 | 0.66 | 0.910658 |
Target: 5'- cGGu--CGGCGUcGAACUUGucGAGCa -3' miRNA: 3'- cCCuguGCCGCGcUUUGAACuuCUUG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 21955 | 0.66 | 0.910658 |
Target: 5'- cGGGGCACaGuGCGCGGAACgaccGAuagccGGAuucGCg -3' miRNA: 3'- -CCCUGUG-C-CGCGCUUUGaa--CU-----UCU---UG- -5' |
|||||||
26766 | 5' | -49.9 | NC_005808.1 | + | 19438 | 0.68 | 0.84692 |
Target: 5'- --uGCACGGUGCGGGACUUcucGGGCu -3' miRNA: 3'- cccUGUGCCGCGCUUUGAAcuuCUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home