miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26767 3' -54.9 NC_005808.1 + 41146 0.66 0.680147
Target:  5'- -cCGCCGACCGCgcCGUCaagaagguguuugCCAUcuuGGGCg -3'
miRNA:   3'- caGCGGCUGGUGa-GCAG-------------GGUGu--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 41002 0.67 0.603067
Target:  5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3'
miRNA:   3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 40891 0.7 0.433227
Target:  5'- cUCGCCGGCaCGC-CGgCCCAC--GGCg -3'
miRNA:   3'- cAGCGGCUG-GUGaGCaGGGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 40732 0.66 0.692321
Target:  5'- -gCGCCGGCCACgggCugaaCCUGCAAgacGGCg -3'
miRNA:   3'- caGCGGCUGGUGa--Gca--GGGUGUU---UCG- -5'
26767 3' -54.9 NC_005808.1 + 39947 0.66 0.647816
Target:  5'- --gGgCGACCGCUgGcccUUCCGCAAAGUg -3'
miRNA:   3'- cagCgGCUGGUGAgC---AGGGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 38676 0.67 0.580807
Target:  5'- aUCGCgGACgGCagcgCGUCCC-CGAAGa -3'
miRNA:   3'- cAGCGgCUGgUGa---GCAGGGuGUUUCg -5'
26767 3' -54.9 NC_005808.1 + 38558 0.7 0.423498
Target:  5'- -cCGcCCGGCUgcGCUCGaCCCGCGcGGCa -3'
miRNA:   3'- caGC-GGCUGG--UGAGCaGGGUGUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 38292 0.67 0.580807
Target:  5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3'
miRNA:   3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5'
26767 3' -54.9 NC_005808.1 + 37905 0.66 0.681256
Target:  5'- cUUGCCGGCCAuuCUCG-CCgGCuauccGGCg -3'
miRNA:   3'- cAGCGGCUGGU--GAGCaGGgUGuu---UCG- -5'
26767 3' -54.9 NC_005808.1 + 37787 0.73 0.279861
Target:  5'- uGUCGCCGGCCAgcaaUCCCGCAgcGCc -3'
miRNA:   3'- -CAGCGGCUGGUgagcAGGGUGUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 37707 0.67 0.603067
Target:  5'- cGUgGCCGaaaacgagGCCGC-CGUCgCCGCGcuGGGCa -3'
miRNA:   3'- -CAgCGGC--------UGGUGaGCAG-GGUGU--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 37694 0.71 0.37689
Target:  5'- cGUCGCCGACCugUCGaa-CAuCGAAGg -3'
miRNA:   3'- -CAGCGGCUGGugAGCaggGU-GUUUCg -5'
26767 3' -54.9 NC_005808.1 + 35770 0.7 0.447063
Target:  5'- cGUCGCCGAgggcaacgacgaaacCCGCgccgUGUCCCugGcugaccAGGCg -3'
miRNA:   3'- -CAGCGGCU---------------GGUGa---GCAGGGugU------UUCG- -5'
26767 3' -54.9 NC_005808.1 + 35017 0.66 0.669029
Target:  5'- cGUCGCCGACgACUucguggacgUGUCCaagccgguggcgcCGCAgaucGAGCa -3'
miRNA:   3'- -CAGCGGCUGgUGA---------GCAGG-------------GUGU----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 34384 0.68 0.547769
Target:  5'- -cCGCCGACCAg-CGcgaCUACGAGGCc -3'
miRNA:   3'- caGCGGCUGGUgaGCag-GGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 34017 0.69 0.498371
Target:  5'- gGUCGCCGugaccgucgugucgcGCCugUCGcugCCCGCcaucGGCg -3'
miRNA:   3'- -CAGCGGC---------------UGGugAGCa--GGGUGuu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 32639 0.71 0.367992
Target:  5'- gGUCGCUGuCCugUCGaaguucggCgCCGCGAAGCu -3'
miRNA:   3'- -CAGCGGCuGGugAGCa-------G-GGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 31737 0.67 0.580807
Target:  5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3'
miRNA:   3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 30582 0.67 0.636625
Target:  5'- cUCGCCGGCCACgg--CCgCGCugcuGGCc -3'
miRNA:   3'- cAGCGGCUGGUGagcaGG-GUGuu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 30375 0.69 0.473392
Target:  5'- uGUUGCCgGugUGCUgCGUCCCGaccaGGGGCa -3'
miRNA:   3'- -CAGCGG-CugGUGA-GCAGGGUg---UUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.