miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26767 3' -54.9 NC_005808.1 + 356 0.67 0.580807
Target:  5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3'
miRNA:   3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 940 0.68 0.526072
Target:  5'- --gGCCGAUCugUcCGUCCUGCGcGGUg -3'
miRNA:   3'- cagCGGCUGGugA-GCAGGGUGUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 2763 0.69 0.503649
Target:  5'- -gUGCCGACCACUgccgacaccucgaCGUUgCGCAGGuGCg -3'
miRNA:   3'- caGCGGCUGGUGA-------------GCAGgGUGUUU-CG- -5'
26767 3' -54.9 NC_005808.1 + 3634 0.68 0.536883
Target:  5'- -aCGCCG-CCgaACUCGUuacCCCACGuccacAAGCa -3'
miRNA:   3'- caGCGGCuGG--UGAGCA---GGGUGU-----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 4017 0.72 0.342174
Target:  5'- -gCGCCGGCCACcagCGUCaugCCGCGcgggucGAGCg -3'
miRNA:   3'- caGCGGCUGGUGa--GCAG---GGUGU------UUCG- -5'
26767 3' -54.9 NC_005808.1 + 4388 0.66 0.647816
Target:  5'- --gGCCGACUugUCGgCCUugAugaAAGCc -3'
miRNA:   3'- cagCGGCUGGugAGCaGGGugU---UUCG- -5'
26767 3' -54.9 NC_005808.1 + 4568 0.67 0.62543
Target:  5'- aGUCGCCGaggcGCUGCUCGgUgCGCcAGGCg -3'
miRNA:   3'- -CAGCGGC----UGGUGAGCaGgGUGuUUCG- -5'
26767 3' -54.9 NC_005808.1 + 5203 0.71 0.40444
Target:  5'- aUUGCCGGCUAC-CGUgCCCACGucGAGg -3'
miRNA:   3'- cAGCGGCUGGUGaGCA-GGGUGU--UUCg -5'
26767 3' -54.9 NC_005808.1 + 5322 0.69 0.483726
Target:  5'- gGUCGCCGGCCACggauaCCACGcuGUc -3'
miRNA:   3'- -CAGCGGCUGGUGagcagGGUGUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 6416 0.67 0.603067
Target:  5'- uGUCGUCGA--ACUCGUCCuCGCuc-GCg -3'
miRNA:   3'- -CAGCGGCUggUGAGCAGG-GUGuuuCG- -5'
26767 3' -54.9 NC_005808.1 + 7348 0.69 0.494166
Target:  5'- -gCGUCGAucaaCCACUCGUgCCACGccAGGUc -3'
miRNA:   3'- caGCGGCU----GGUGAGCAgGGUGU--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 7912 0.72 0.350633
Target:  5'- aUCGCCaGCUGCUCGUUgCGCucGGCg -3'
miRNA:   3'- cAGCGGcUGGUGAGCAGgGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 8396 0.66 0.681256
Target:  5'- aUCGCCGcCCACgUGUCggGCAgcGAGCa -3'
miRNA:   3'- cAGCGGCuGGUGaGCAGggUGU--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 8420 0.66 0.681256
Target:  5'- --gGCCGugCGCUUGUCuacggCCuuGAGGCu -3'
miRNA:   3'- cagCGGCugGUGAGCAG-----GGugUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 8524 0.67 0.580807
Target:  5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3'
miRNA:   3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 8647 0.68 0.547769
Target:  5'- gGUCGCCGGCC-UUCaUCgCGCGGucGGCa -3'
miRNA:   3'- -CAGCGGCUGGuGAGcAGgGUGUU--UCG- -5'
26767 3' -54.9 NC_005808.1 + 8847 0.71 0.385932
Target:  5'- -aCGCgGGCCAgcgcguuggcCUCgGUCgCCACGAAGCg -3'
miRNA:   3'- caGCGgCUGGU----------GAG-CAG-GGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 9601 0.66 0.680147
Target:  5'- uGUCGCUGGgCACUuccagcaCGUaCCACuuGGCg -3'
miRNA:   3'- -CAGCGGCUgGUGA-------GCAgGGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 9747 0.68 0.547769
Target:  5'- -gCGCCGACCGuCUgCGgCCagGCGAAGCc -3'
miRNA:   3'- caGCGGCUGGU-GA-GCaGGg-UGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 13123 0.67 0.59192
Target:  5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3'
miRNA:   3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.