miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26767 3' -54.9 NC_005808.1 + 13545 0.66 0.647816
Target:  5'- uGUCgGCCG-CCugACUCGgugCCCAC--GGCg -3'
miRNA:   3'- -CAG-CGGCuGG--UGAGCa--GGGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 15743 0.69 0.473392
Target:  5'- -cCGCCGACCAUuacccaauUCG-CCCGCuccaucGGGGCg -3'
miRNA:   3'- caGCGGCUGGUG--------AGCaGGGUG------UUUCG- -5'
26767 3' -54.9 NC_005808.1 + 17306 0.67 0.636625
Target:  5'- --gGCCGGCCGCaCGaCCU-CAAGGCa -3'
miRNA:   3'- cagCGGCUGGUGaGCaGGGuGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 17999 0.67 0.603067
Target:  5'- aGUCGCCgccgGACUugUCGUCCgAaccuuGCg -3'
miRNA:   3'- -CAGCGG----CUGGugAGCAGGgUguuu-CG- -5'
26767 3' -54.9 NC_005808.1 + 18159 0.66 0.692321
Target:  5'- uGUCGCCGagGCCGCgcgCGgcaCCgACAAaucgGGCc -3'
miRNA:   3'- -CAGCGGC--UGGUGa--GCa--GGgUGUU----UCG- -5'
26767 3' -54.9 NC_005808.1 + 18301 0.67 0.580807
Target:  5'- cUCGCCGACCucAC-CGccCCCACGuGGUc -3'
miRNA:   3'- cAGCGGCUGG--UGaGCa-GGGUGUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 19812 0.67 0.636625
Target:  5'- -aUGCUGACCGg----CCCGCAGGGCg -3'
miRNA:   3'- caGCGGCUGGUgagcaGGGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 20513 0.71 0.385932
Target:  5'- --aGCCGguacacGCCgGCUCGUUCCAgAAAGCg -3'
miRNA:   3'- cagCGGC------UGG-UGAGCAGGGUgUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 20536 0.67 0.636625
Target:  5'- -gCGCCGACCGCga--CCCGagcAAGCg -3'
miRNA:   3'- caGCGGCUGGUGagcaGGGUgu-UUCG- -5'
26767 3' -54.9 NC_005808.1 + 21315 0.67 0.609768
Target:  5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3'
miRNA:   3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 21334 0.69 0.515345
Target:  5'- -aUGCCGGCCACcgCG-CCCAgGuuGCc -3'
miRNA:   3'- caGCGGCUGGUGa-GCaGGGUgUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 21937 0.69 0.463172
Target:  5'- -cCGCCGACCAa--GgCCCaACGGGGCa -3'
miRNA:   3'- caGCGGCUGGUgagCaGGG-UGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 23721 0.67 0.61424
Target:  5'- gGUCGCgGGCCAgugcCUCGguggCgCGCAGcAGCg -3'
miRNA:   3'- -CAGCGgCUGGU----GAGCa---GgGUGUU-UCG- -5'
26767 3' -54.9 NC_005808.1 + 25046 0.66 0.681256
Target:  5'- uGUCGCgCGAuCCGC-CGUUaCCAUcgGGCa -3'
miRNA:   3'- -CAGCG-GCU-GGUGaGCAG-GGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 25840 0.71 0.367992
Target:  5'- cGUCGCCGGugGCUaCG-CCCAC-GAGCg -3'
miRNA:   3'- -CAGCGGCUggUGA-GCaGGGUGuUUCG- -5'
26767 3' -54.9 NC_005808.1 + 27759 0.71 0.374205
Target:  5'- cUCGCUG-CC-CUCGUCCggcucggacacguaCACGAAGCg -3'
miRNA:   3'- cAGCGGCuGGuGAGCAGG--------------GUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 28907 1.11 0.000603
Target:  5'- cGUCGCCGACCACUCGUCCCACAAAGCc -3'
miRNA:   3'- -CAGCGGCUGGUGAGCAGGGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 29337 0.7 0.413902
Target:  5'- gGUCGCCGGCCAagucCUCGaaCCACGcgccgguGGCc -3'
miRNA:   3'- -CAGCGGCUGGU----GAGCagGGUGUu------UCG- -5'
26767 3' -54.9 NC_005808.1 + 29416 0.66 0.670143
Target:  5'- -aCGCCGGCCAagggCG-CCCAgCGcGGCc -3'
miRNA:   3'- caGCGGCUGGUga--GCaGGGU-GUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 30097 0.66 0.670143
Target:  5'- -gCGCCacGGCC-CUUGUCCCA---GGCg -3'
miRNA:   3'- caGCGG--CUGGuGAGCAGGGUguuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.