miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26767 3' -54.9 NC_005808.1 + 17999 0.67 0.603067
Target:  5'- aGUCGCCgccgGACUugUCGUCCgAaccuuGCg -3'
miRNA:   3'- -CAGCGG----CUGGugAGCAGGgUguuu-CG- -5'
26767 3' -54.9 NC_005808.1 + 13123 0.67 0.59192
Target:  5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3'
miRNA:   3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5'
26767 3' -54.9 NC_005808.1 + 356 0.67 0.580807
Target:  5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3'
miRNA:   3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 31737 0.67 0.580807
Target:  5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3'
miRNA:   3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 17306 0.67 0.636625
Target:  5'- --gGCCGGCCGCaCGaCCU-CAAGGCa -3'
miRNA:   3'- cagCGGCUGGUGaGCaGGGuGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 37707 0.67 0.603067
Target:  5'- cGUgGCCGaaaacgagGCCGC-CGUCgCCGCGcuGGGCa -3'
miRNA:   3'- -CAgCGGC--------UGGUGaGCAG-GGUGU--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 21315 0.67 0.609768
Target:  5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3'
miRNA:   3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 4568 0.67 0.62543
Target:  5'- aGUCGCCGaggcGCUGCUCGgUgCGCcAGGCg -3'
miRNA:   3'- -CAGCGGC----UGGUGAGCaGgGUGuUUCG- -5'
26767 3' -54.9 NC_005808.1 + 20536 0.67 0.636625
Target:  5'- -gCGCCGACCGCga--CCCGagcAAGCg -3'
miRNA:   3'- caGCGGCUGGUGagcaGGGUgu-UUCG- -5'
26767 3' -54.9 NC_005808.1 + 41002 0.67 0.603067
Target:  5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3'
miRNA:   3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 38292 0.67 0.580807
Target:  5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3'
miRNA:   3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5'
26767 3' -54.9 NC_005808.1 + 8524 0.67 0.580807
Target:  5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3'
miRNA:   3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 34384 0.68 0.547769
Target:  5'- -cCGCCGACCAg-CGcgaCUACGAGGCc -3'
miRNA:   3'- caGCGGCUGGUgaGCag-GGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 9747 0.68 0.547769
Target:  5'- -gCGCCGACCGuCUgCGgCCagGCGAAGCc -3'
miRNA:   3'- caGCGGCUGGU-GA-GCaGGg-UGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 8647 0.68 0.547769
Target:  5'- gGUCGCCGGCC-UUCaUCgCGCGGucGGCa -3'
miRNA:   3'- -CAGCGGCUGGuGAGcAGgGUGUU--UCG- -5'
26767 3' -54.9 NC_005808.1 + 3634 0.68 0.536883
Target:  5'- -aCGCCG-CCgaACUCGUuacCCCACGuccacAAGCa -3'
miRNA:   3'- caGCGGCuGG--UGAGCA---GGGUGU-----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 940 0.68 0.526072
Target:  5'- --gGCCGAUCugUcCGUCCUGCGcGGUg -3'
miRNA:   3'- cagCGGCUGGugA-GCAGGGUGUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 21334 0.69 0.515345
Target:  5'- -aUGCCGGCCACcgCG-CCCAgGuuGCc -3'
miRNA:   3'- caGCGGCUGGUGa-GCaGGGUgUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 34017 0.69 0.498371
Target:  5'- gGUCGCCGugaccgucgugucgcGCCugUCGcugCCCGCcaucGGCg -3'
miRNA:   3'- -CAGCGGC---------------UGGugAGCa--GGGUGuu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 7348 0.69 0.494166
Target:  5'- -gCGUCGAucaaCCACUCGUgCCACGccAGGUc -3'
miRNA:   3'- caGCGGCU----GGUGAGCAgGGUGU--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.