miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26767 3' -54.9 NC_005808.1 + 37787 0.73 0.279861
Target:  5'- uGUCGCCGGCCAgcaaUCCCGCAgcGCc -3'
miRNA:   3'- -CAGCGGCUGGUgagcAGGGUGUuuCG- -5'
26767 3' -54.9 NC_005808.1 + 6416 0.67 0.603067
Target:  5'- uGUCGUCGA--ACUCGUCCuCGCuc-GCg -3'
miRNA:   3'- -CAGCGGCUggUGAGCAGG-GUGuuuCG- -5'
26767 3' -54.9 NC_005808.1 + 4568 0.67 0.62543
Target:  5'- aGUCGCCGaggcGCUGCUCGgUgCGCcAGGCg -3'
miRNA:   3'- -CAGCGGC----UGGUGAGCaGgGUGuUUCG- -5'
26767 3' -54.9 NC_005808.1 + 18159 0.66 0.692321
Target:  5'- uGUCGCCGagGCCGCgcgCGgcaCCgACAAaucgGGCc -3'
miRNA:   3'- -CAGCGGC--UGGUGa--GCa--GGgUGUU----UCG- -5'
26767 3' -54.9 NC_005808.1 + 40891 0.7 0.433227
Target:  5'- cUCGCCGGCaCGC-CGgCCCAC--GGCg -3'
miRNA:   3'- cAGCGGCUG-GUGaGCaGGGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 35770 0.7 0.447063
Target:  5'- cGUCGCCGAgggcaacgacgaaacCCGCgccgUGUCCCugGcugaccAGGCg -3'
miRNA:   3'- -CAGCGGCU---------------GGUGa---GCAGGGugU------UUCG- -5'
26767 3' -54.9 NC_005808.1 + 30375 0.69 0.473392
Target:  5'- uGUUGCCgGugUGCUgCGUCCCGaccaGGGGCa -3'
miRNA:   3'- -CAGCGG-CugGUGA-GCAGGGUg---UUUCG- -5'
26767 3' -54.9 NC_005808.1 + 2763 0.69 0.503649
Target:  5'- -gUGCCGACCACUgccgacaccucgaCGUUgCGCAGGuGCg -3'
miRNA:   3'- caGCGGCUGGUGA-------------GCAGgGUGUUU-CG- -5'
26767 3' -54.9 NC_005808.1 + 356 0.67 0.580807
Target:  5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3'
miRNA:   3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 41002 0.67 0.603067
Target:  5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3'
miRNA:   3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5'
26767 3' -54.9 NC_005808.1 + 31737 0.67 0.580807
Target:  5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3'
miRNA:   3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 34384 0.68 0.547769
Target:  5'- -cCGCCGACCAg-CGcgaCUACGAGGCc -3'
miRNA:   3'- caGCGGCUGGUgaGCag-GGUGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 7912 0.72 0.350633
Target:  5'- aUCGCCaGCUGCUCGUUgCGCucGGCg -3'
miRNA:   3'- cAGCGGcUGGUGAGCAGgGUGuuUCG- -5'
26767 3' -54.9 NC_005808.1 + 38676 0.67 0.580807
Target:  5'- aUCGCgGACgGCagcgCGUCCC-CGAAGa -3'
miRNA:   3'- cAGCGgCUGgUGa---GCAGGGuGUUUCg -5'
26767 3' -54.9 NC_005808.1 + 25840 0.71 0.367992
Target:  5'- cGUCGCCGGugGCUaCG-CCCAC-GAGCg -3'
miRNA:   3'- -CAGCGGCUggUGA-GCaGGGUGuUUCG- -5'
26767 3' -54.9 NC_005808.1 + 9747 0.68 0.547769
Target:  5'- -gCGCCGACCGuCUgCGgCCagGCGAAGCc -3'
miRNA:   3'- caGCGGCUGGU-GA-GCaGGg-UGUUUCG- -5'
26767 3' -54.9 NC_005808.1 + 37707 0.67 0.603067
Target:  5'- cGUgGCCGaaaacgagGCCGC-CGUCgCCGCGcuGGGCa -3'
miRNA:   3'- -CAgCGGC--------UGGUGaGCAG-GGUGU--UUCG- -5'
26767 3' -54.9 NC_005808.1 + 21315 0.67 0.609768
Target:  5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3'
miRNA:   3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5'
26767 3' -54.9 NC_005808.1 + 38558 0.7 0.423498
Target:  5'- -cCGcCCGGCUgcGCUCGaCCCGCGcGGCa -3'
miRNA:   3'- caGC-GGCUGG--UGAGCaGGGUGUuUCG- -5'
26767 3' -54.9 NC_005808.1 + 15743 0.69 0.473392
Target:  5'- -cCGCCGACCAUuacccaauUCG-CCCGCuccaucGGGGCg -3'
miRNA:   3'- caGCGGCUGGUG--------AGCaGGGUG------UUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.