miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26772 5' -61 NC_005808.1 + 519 0.66 0.331692
Target:  5'- gGCCaucGCUGgCcgaaUACCUCGGacgugcGCGGGCCg -3'
miRNA:   3'- aCGG---CGAC-Ga---GUGGAGCCa-----CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 792 0.68 0.239903
Target:  5'- gGCCGCUGCgcaaUCGCCgucagcaGGUGgCuGGGCUu -3'
miRNA:   3'- aCGGCGACG----AGUGGag-----CCAC-G-UCCGG- -5'
26772 5' -61 NC_005808.1 + 3764 0.7 0.194655
Target:  5'- cGCCGCUGgaCguaGCCUCGGU-CGuGCCg -3'
miRNA:   3'- aCGGCGACgaG---UGGAGCCAcGUcCGG- -5'
26772 5' -61 NC_005808.1 + 4355 0.7 0.194655
Target:  5'- gGCCGUUGCgUugC-CGGUGCGcgugaaggcgacGGCCg -3'
miRNA:   3'- aCGGCGACGaGugGaGCCACGU------------CCGG- -5'
26772 5' -61 NC_005808.1 + 4568 0.69 0.205215
Target:  5'- aGUCGCcgagGCgCugCUCGGUGCgccAGGCg -3'
miRNA:   3'- aCGGCGa---CGaGugGAGCCACG---UCCGg -5'
26772 5' -61 NC_005808.1 + 5161 0.68 0.261655
Target:  5'- cGUCGCUGCUCAcgcCCUUGGcgaggguuuuguauuUGCuGGUg -3'
miRNA:   3'- aCGGCGACGAGU---GGAGCC---------------ACGuCCGg -5'
26772 5' -61 NC_005808.1 + 6297 0.69 0.221983
Target:  5'- cGCCGggGCUUAUCUcCGGUGCGuGCa -3'
miRNA:   3'- aCGGCgaCGAGUGGA-GCCACGUcCGg -5'
26772 5' -61 NC_005808.1 + 7035 0.68 0.258358
Target:  5'- gUGCCGcCUGUugcagcaggcgcaUgGCCUCGGgcgGCAGcGUCg -3'
miRNA:   3'- -ACGGC-GACG-------------AgUGGAGCCa--CGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 7229 0.66 0.347914
Target:  5'- aGCC-CUGCa-ACUUCGGccacuggcGCGGGCCg -3'
miRNA:   3'- aCGGcGACGagUGGAGCCa-------CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 7232 0.77 0.058844
Target:  5'- cGCCGC-GCUCAcCCUCGGcgaUGUcGGCCg -3'
miRNA:   3'- aCGGCGaCGAGU-GGAGCC---ACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 8554 0.71 0.157051
Target:  5'- gGCCGC-GCUCgACCUCauccuGGgcgucGUAGGCCg -3'
miRNA:   3'- aCGGCGaCGAG-UGGAG-----CCa----CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 8677 0.69 0.227826
Target:  5'- aGCgGCUGCUgCGCCgcccaGGUGUGcGCCg -3'
miRNA:   3'- aCGgCGACGA-GUGGag---CCACGUcCGG- -5'
26772 5' -61 NC_005808.1 + 8680 0.72 0.126139
Target:  5'- gUGCCGC-GCgCACCUCGGcguuggUGUAcuGGCCg -3'
miRNA:   3'- -ACGGCGaCGaGUGGAGCC------ACGU--CCGG- -5'
26772 5' -61 NC_005808.1 + 8803 0.66 0.347914
Target:  5'- gGCCGCgccgGUcaguaccgaUCugCUgGGU-CGGGCCa -3'
miRNA:   3'- aCGGCGa---CG---------AGugGAgCCAcGUCCGG- -5'
26772 5' -61 NC_005808.1 + 8852 0.67 0.30094
Target:  5'- gGCCaGCgcGUUgGCCUCGGUcgccacgaaGCGGGCg -3'
miRNA:   3'- aCGG-CGa-CGAgUGGAGCCA---------CGUCCGg -5'
26772 5' -61 NC_005808.1 + 9404 0.66 0.339733
Target:  5'- aUGUCGC-GCagGCCgCGGgcuUGCAGGUCu -3'
miRNA:   3'- -ACGGCGaCGagUGGaGCC---ACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 9661 0.68 0.248671
Target:  5'- aGCCG-UGgUCGCCcUGGccgaacagccagccgUGCAGGCCg -3'
miRNA:   3'- aCGGCgACgAGUGGaGCC---------------ACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 10196 0.66 0.323793
Target:  5'- gGCgCGCgGCUUuuUUUCGGUGCuGGCUu -3'
miRNA:   3'- aCG-GCGaCGAGu-GGAGCCACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 10739 0.68 0.233799
Target:  5'- cGCCuuGCUGCUCGCCaaGG-GCGcgcucgacuucGGCCc -3'
miRNA:   3'- aCGG--CGACGAGUGGagCCaCGU-----------CCGG- -5'
26772 5' -61 NC_005808.1 + 10797 0.66 0.339733
Target:  5'- uUGCauguaCUGCUgCGCCUCGGcGC-GGCUg -3'
miRNA:   3'- -ACGgc---GACGA-GUGGAGCCaCGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.