miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26772 5' -61 NC_005808.1 + 20226 0.69 0.221983
Target:  5'- gGCCgGCUGUUgGCCUUGgGUGCcuugcuccuGGGUCg -3'
miRNA:   3'- aCGG-CGACGAgUGGAGC-CACG---------UCCGG- -5'
26772 5' -61 NC_005808.1 + 41471 0.71 0.152841
Target:  5'- gGCCGCUGCUCAUgaUCGacgGCAaGCCu -3'
miRNA:   3'- aCGGCGACGAGUGg-AGCca-CGUcCGG- -5'
26772 5' -61 NC_005808.1 + 8554 0.71 0.157051
Target:  5'- gGCCGC-GCUCgACCUCauccuGGgcgucGUAGGCCg -3'
miRNA:   3'- aCGGCGaCGAG-UGGAG-----CCa----CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 3764 0.7 0.194655
Target:  5'- cGCCGCUGgaCguaGCCUCGGU-CGuGCCg -3'
miRNA:   3'- aCGGCGACgaG---UGGAGCCAcGUcCGG- -5'
26772 5' -61 NC_005808.1 + 4355 0.7 0.194655
Target:  5'- gGCCGUUGCgUugC-CGGUGCGcgugaaggcgacGGCCg -3'
miRNA:   3'- aCGGCGACGaGugGaGCCACGU------------CCGG- -5'
26772 5' -61 NC_005808.1 + 39661 0.69 0.199874
Target:  5'- gUGCCGC-GCg-ACg-CGGUGUGGGCCg -3'
miRNA:   3'- -ACGGCGaCGagUGgaGCCACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 26059 0.69 0.205215
Target:  5'- gGCgCGCUccaugcGCUCGgcgaaCUCGGgGCGGGCCu -3'
miRNA:   3'- aCG-GCGA------CGAGUg----GAGCCaCGUCCGG- -5'
26772 5' -61 NC_005808.1 + 15651 0.69 0.209027
Target:  5'- gGCCGCUgauauggcuuaccgGCUCGCC-CGaGUacGuCAGGCCg -3'
miRNA:   3'- aCGGCGA--------------CGAGUGGaGC-CA--C-GUCCGG- -5'
26772 5' -61 NC_005808.1 + 32121 0.69 0.214578
Target:  5'- gGCCGCUGCcgACCUCGacGCccccgaaucccucaAGGCCg -3'
miRNA:   3'- aCGGCGACGagUGGAGCcaCG--------------UCCGG- -5'
26772 5' -61 NC_005808.1 + 40708 0.71 0.152841
Target:  5'- cGCUGCUGUUCGCCcaccCGGccagcGCcGGCCa -3'
miRNA:   3'- aCGGCGACGAGUGGa---GCCa----CGuCCGG- -5'
26772 5' -61 NC_005808.1 + 21576 0.71 0.152841
Target:  5'- gUGCCGCUcgGC-CACUUCGGUgGC-GGUCa -3'
miRNA:   3'- -ACGGCGA--CGaGUGGAGCCA-CGuCCGG- -5'
26772 5' -61 NC_005808.1 + 11594 0.71 0.148734
Target:  5'- gGCCGCcgGCUgGCCgcCGGgcaGCAGuGCCa -3'
miRNA:   3'- aCGGCGa-CGAgUGGa-GCCa--CGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 15361 0.81 0.027464
Target:  5'- cGUgCGCUGCuUCACCUCGGUgagcgcguccgcguGCGGGCCg -3'
miRNA:   3'- aCG-GCGACG-AGUGGAGCCA--------------CGUCCGG- -5'
26772 5' -61 NC_005808.1 + 7232 0.77 0.058844
Target:  5'- cGCCGC-GCUCAcCCUCGGcgaUGUcGGCCg -3'
miRNA:   3'- aCGGCGaCGAGU-GGAGCC---ACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 18548 0.74 0.090201
Target:  5'- gGCCGaaGUcgaUCACgUCGGUGgAGGCCg -3'
miRNA:   3'- aCGGCgaCG---AGUGgAGCCACgUCCGG- -5'
26772 5' -61 NC_005808.1 + 31575 0.73 0.112886
Target:  5'- gUGCUccuuugGCUGCUCGCCUgGGccUGCuucuGGCCc -3'
miRNA:   3'- -ACGG------CGACGAGUGGAgCC--ACGu---CCGG- -5'
26772 5' -61 NC_005808.1 + 12532 0.73 0.114151
Target:  5'- aGgUGCUGCUCgACCUCGGcgucggugaauuucuUGCcGGCCu -3'
miRNA:   3'- aCgGCGACGAG-UGGAGCC---------------ACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 28177 0.72 0.119342
Target:  5'- cGCCGUUGCccaCGCCcagcaGGUGCGGcGCCu -3'
miRNA:   3'- aCGGCGACGa--GUGGag---CCACGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 8680 0.72 0.126139
Target:  5'- gUGCCGC-GCgCACCUCGGcguuggUGUAcuGGCCg -3'
miRNA:   3'- -ACGGCGaCGaGUGGAGCC------ACGU--CCGG- -5'
26772 5' -61 NC_005808.1 + 34042 0.71 0.14082
Target:  5'- cUGUCGCUGCcCGCCaUCGGcGC-GGCUg -3'
miRNA:   3'- -ACGGCGACGaGUGG-AGCCaCGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.