miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 3' -55.4 NC_005808.1 + 18134 0.67 0.570434
Target:  5'- cGAACuuGuCGCccgGCUCGCGCAGCUu-- -3'
miRNA:   3'- -CUUGggCcGCG---CGAGCGUGUUGAuac -5'
26775 3' -55.4 NC_005808.1 + 18461 0.66 0.615296
Target:  5'- uGGGCCaGGCGCGCagccgGCugGACUAc- -3'
miRNA:   3'- -CUUGGgCCGCGCGag---CGugUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 18522 0.68 0.494247
Target:  5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3'
miRNA:   3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 19083 0.75 0.171367
Target:  5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3'
miRNA:   3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 20270 0.79 0.105594
Target:  5'- aGAACUCGGCGCGUUCgGCACGGCc--- -3'
miRNA:   3'- -CUUGGGCCGCGCGAG-CGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 23131 0.68 0.494247
Target:  5'- -cACCUGGCGCaa--GCugAACUAUGg -3'
miRNA:   3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 26029 0.67 0.548284
Target:  5'- --gUCCGGCGCGUcgCGCuACAACg--- -3'
miRNA:   3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 26272 0.67 0.559328
Target:  5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3'
miRNA:   3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5'
26775 3' -55.4 NC_005808.1 + 27887 0.68 0.46301
Target:  5'- --uCuuGGCGUGCUCGCcCAGCa--- -3'
miRNA:   3'- cuuGggCCGCGCGAGCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 28312 0.74 0.202251
Target:  5'- aGAACUCGGCGCGCUCgGCGuCGgACUcgAUGg -3'
miRNA:   3'- -CUUGGGCCGCGCGAG-CGU-GU-UGA--UAC- -5'
26775 3' -55.4 NC_005808.1 + 28757 0.67 0.537309
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 29309 0.68 0.47331
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26775 3' -55.4 NC_005808.1 + 29427 0.66 0.604033
Target:  5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3'
miRNA:   3'- cuUGGGccGCGCGAGCGUGU--UGauac -5'
26775 3' -55.4 NC_005808.1 + 31232 0.73 0.244276
Target:  5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3'
miRNA:   3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 31651 0.7 0.394459
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 32043 1.07 0.000876
Target:  5'- uGAACCCGGCGCGCUCGCACAACUAUGc -3'
miRNA:   3'- -CUUGGGCCGCGCGAGCGUGUUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 33377 0.7 0.385213
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26775 3' -55.4 NC_005808.1 + 34827 0.66 0.615296
Target:  5'- uGGACgCCGGCGCagaUCGCGCcgguGCUGc- -3'
miRNA:   3'- -CUUG-GGCCGCGcg-AGCGUGu---UGAUac -5'
26775 3' -55.4 NC_005808.1 + 36860 0.75 0.171367
Target:  5'- -uGCCCGGCGCGCU-GgGCGAuCUGUGc -3'
miRNA:   3'- cuUGGGCCGCGCGAgCgUGUU-GAUAC- -5'
26775 3' -55.4 NC_005808.1 + 37927 0.67 0.559328
Target:  5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3'
miRNA:   3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.