Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26775 | 3' | -55.4 | NC_005808.1 | + | 26029 | 0.67 | 0.548284 |
Target: 5'- --gUCCGGCGCGUcgCGCuACAACg--- -3' miRNA: 3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 5746 | 0.67 | 0.548284 |
Target: 5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3' miRNA: 3'- cuUGGGcCGCGCGaGCgUGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 37927 | 0.67 | 0.559328 |
Target: 5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3' miRNA: 3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 15357 | 0.66 | 0.581593 |
Target: 5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3' miRNA: 3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 12976 | 0.66 | 0.581593 |
Target: 5'- aAGCCCGGCcacaaGCGCccggCGCugGACa--- -3' miRNA: 3'- cUUGGGCCG-----CGCGa---GCGugUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 1080 | 0.66 | 0.592795 |
Target: 5'- cGACCCGGCGCGCguacuucaUGUugGCGGCg--- -3' miRNA: 3'- cUUGGGCCGCGCGa-------GCG--UGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 5632 | 0.66 | 0.615296 |
Target: 5'- uGGCgCGGCGCaGCUUGCugGugGCUGg- -3' miRNA: 3'- cUUGgGCCGCG-CGAGCGugU--UGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 18461 | 0.66 | 0.615296 |
Target: 5'- uGGGCCaGGCGCGCagccgGCugGACUAc- -3' miRNA: 3'- -CUUGGgCCGCGCGag---CGugUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 12523 | 0.67 | 0.537309 |
Target: 5'- -cGCCCGG-GCGC-CGCACAAa---- -3' miRNA: 3'- cuUGGGCCgCGCGaGCGUGUUgauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 17517 | 0.67 | 0.526411 |
Target: 5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3' miRNA: 3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38006 | 0.67 | 0.526411 |
Target: 5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3' miRNA: 3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 19083 | 0.75 | 0.171367 |
Target: 5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3' miRNA: 3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38559 | 0.74 | 0.219437 |
Target: 5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3' miRNA: 3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 2743 | 0.72 | 0.293308 |
Target: 5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3' miRNA: 3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 15180 | 0.72 | 0.308661 |
Target: 5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3' miRNA: 3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 33377 | 0.7 | 0.385213 |
Target: 5'- -cGCCgGGCGCGC-CGCAgAACg--- -3' miRNA: 3'- cuUGGgCCGCGCGaGCGUgUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 31651 | 0.7 | 0.394459 |
Target: 5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3' miRNA: 3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 29309 | 0.68 | 0.47331 |
Target: 5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3' miRNA: 3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 18522 | 0.68 | 0.494247 |
Target: 5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3' miRNA: 3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 23131 | 0.68 | 0.494247 |
Target: 5'- -cACCUGGCGCaa--GCugAACUAUGg -3' miRNA: 3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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