Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26775 | 5' | -60.7 | NC_005808.1 | + | 27700 | 0.66 | 0.399948 |
Target: 5'- -----aGGCCgCgCGCCGGCAgCGGCuCGCc -3' miRNA: 3'- gaguagCCGG-G-GCGGUUGU-GCCG-GCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 19251 | 0.66 | 0.399948 |
Target: 5'- uUCAUCGGCggcgaggCCGUCGaauuGCGCGGCUa- -3' miRNA: 3'- gAGUAGCCGg------GGCGGU----UGUGCCGGcg -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 25707 | 0.66 | 0.399948 |
Target: 5'- gCUCAUaccaGCCCCG-CGGCGgGGUCGUc -3' miRNA: 3'- -GAGUAgc--CGGGGCgGUUGUgCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 613 | 0.66 | 0.399052 |
Target: 5'- --gGUCGGCCagcagcgCCGUgGACACGGCguccgGCg -3' miRNA: 3'- gagUAGCCGG-------GGCGgUUGUGCCGg----CG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 39738 | 0.66 | 0.397263 |
Target: 5'- aCUgGUCgaaccaGGCCCCucgcuggugcuggcGCCGcuGCGCguGGCCGCg -3' miRNA: 3'- -GAgUAG------CCGGGG--------------CGGU--UGUG--CCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 11144 | 0.66 | 0.391043 |
Target: 5'- ---uUCGG-CCUGCU-GCugGGCCGCc -3' miRNA: 3'- gaguAGCCgGGGCGGuUGugCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 38715 | 0.66 | 0.391043 |
Target: 5'- uUCggCGGCgaCGgCAGCGCGGCCu- -3' miRNA: 3'- gAGuaGCCGggGCgGUUGUGCCGGcg -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 3425 | 0.66 | 0.385762 |
Target: 5'- ---uUCGGCCCCGCUAcucaagaaucaggugGuCACagacGCCGCg -3' miRNA: 3'- gaguAGCCGGGGCGGU---------------U-GUGc---CGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 27767 | 0.66 | 0.373625 |
Target: 5'- cCUCGUcCGGCUCgGaCAcguacacgaaGCGCGcGCCGCg -3' miRNA: 3'- -GAGUA-GCCGGGgCgGU----------UGUGC-CGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 30107 | 0.66 | 0.373625 |
Target: 5'- cCUUGUCccaggcgaugaGGCCgCGCCAgaACACG-CCGCc -3' miRNA: 3'- -GAGUAG-----------CCGGgGCGGU--UGUGCcGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 27821 | 0.66 | 0.373625 |
Target: 5'- cCUCGcgCGcGCugCCCGCgGugGCGcCGGCCGCg -3' miRNA: 3'- -GAGUa-GC-CG--GGGCGgU--UGU-GCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 18272 | 0.66 | 0.373625 |
Target: 5'- -gCAUC-GCUCUGCCGccugaccCGCGGCUGCu -3' miRNA: 3'- gaGUAGcCGGGGCGGUu------GUGCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 31900 | 0.66 | 0.370205 |
Target: 5'- --aAUCGGCCgaggccgugcgcgCUGCCGucaagacgcacuggACACGGCgGCg -3' miRNA: 3'- gagUAGCCGG-------------GGCGGU--------------UGUGCCGgCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 25594 | 0.66 | 0.368504 |
Target: 5'- gUCugCGGCCCaggcaguggcaaccaCGgCGGCGCGGUCGCc -3' miRNA: 3'- gAGuaGCCGGG---------------GCgGUUGUGCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 21621 | 0.66 | 0.365116 |
Target: 5'- --aAUCGGCCUCGgaCAACACGcCCGa -3' miRNA: 3'- gagUAGCCGGGGCg-GUUGUGCcGGCg -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 732 | 0.66 | 0.365116 |
Target: 5'- ----gCGGCUuuGCCGACAacgcCGGCCa- -3' miRNA: 3'- gaguaGCCGGggCGGUUGU----GCCGGcg -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 29521 | 0.66 | 0.365116 |
Target: 5'- -gCGUggaGGCCgagCGCCAAUucaacaugcagACGGCCGCa -3' miRNA: 3'- gaGUAg--CCGGg--GCGGUUG-----------UGCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 18145 | 0.66 | 0.365116 |
Target: 5'- gUCGUCGGCgucaaugUCGCCGA---GGCCGCg -3' miRNA: 3'- gAGUAGCCGg------GGCGGUUgugCCGGCG- -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 27502 | 0.66 | 0.356741 |
Target: 5'- -cCggCGGCCucggCCGCCAgcuucucgGCGCGGUCGg -3' miRNA: 3'- gaGuaGCCGG----GGCGGU--------UGUGCCGGCg -5' |
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26775 | 5' | -60.7 | NC_005808.1 | + | 3283 | 0.66 | 0.356741 |
Target: 5'- --aGUCGGCCCgUGCCuuuGCGauGCCGg -3' miRNA: 3'- gagUAGCCGGG-GCGGu--UGUgcCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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