Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26776 | 5' | -50.4 | NC_005808.1 | + | 32228 | 1.12 | 0.001534 |
Target: 5'- cCGAACUCACCACCACCGCAAACAAGGa -3' miRNA: 3'- -GCUUGAGUGGUGGUGGCGUUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13268 | 0.79 | 0.268722 |
Target: 5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3' miRNA: 3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 16601 | 0.76 | 0.356918 |
Target: 5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3' miRNA: 3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 22749 | 0.74 | 0.484691 |
Target: 5'- cCGAACUCACCA-CGCUGCuGAACAAa- -3' miRNA: 3'- -GCUUGAGUGGUgGUGGCG-UUUGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 27273 | 0.74 | 0.495432 |
Target: 5'- -cGGCUCACCGCCugCacucaaGAGCGAGGa -3' miRNA: 3'- gcUUGAGUGGUGGugGcg----UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 34393 | 0.74 | 0.495432 |
Target: 5'- aCGAACUgGCCGCCAugUCGCuGACGAacGGg -3' miRNA: 3'- -GCUUGAgUGGUGGU--GGCGuUUGUU--CC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33970 | 0.73 | 0.52827 |
Target: 5'- gCGAcCUCGCCACCGCaGCGGcCGAGa -3' miRNA: 3'- -GCUuGAGUGGUGGUGgCGUUuGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 2828 | 0.73 | 0.513934 |
Target: 5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3' miRNA: 3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 28972 | 0.72 | 0.57322 |
Target: 5'- cCGGACUUgcuGCCGCUACCGaugcugucGGCAAGGu -3' miRNA: 3'- -GCUUGAG---UGGUGGUGGCgu------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 30368 | 0.72 | 0.584611 |
Target: 5'- aGAACcCGCCGCUGCUGUAGGguGGGu -3' miRNA: 3'- gCUUGaGUGGUGGUGGCGUUUguUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 17191 | 0.72 | 0.607514 |
Target: 5'- cCGGGCugauuUCGCCGCCGCCGaagGAGCGuugcAGGa -3' miRNA: 3'- -GCUUG-----AGUGGUGGUGGCg--UUUGU----UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 5359 | 0.71 | 0.664984 |
Target: 5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3' miRNA: 3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 21929 | 0.71 | 0.676425 |
Target: 5'- aGAugUCACCGCCgACCaagGCccAACGGGGc -3' miRNA: 3'- gCUugAGUGGUGG-UGG---CGu-UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 18041 | 0.71 | 0.664984 |
Target: 5'- cCGGcCUCGCCAUCGCCGCGcugcGCGAc- -3' miRNA: 3'- -GCUuGAGUGGUGGUGGCGUu---UGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 41447 | 0.71 | 0.65351 |
Target: 5'- gGGGCgUgACCGCCGCCGUAGcGCGAGc -3' miRNA: 3'- gCUUG-AgUGGUGGUGGCGUU-UGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6572 | 0.71 | 0.642015 |
Target: 5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3' miRNA: 3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33036 | 0.71 | 0.629358 |
Target: 5'- cCGGauGCUCGCCACCGgcgagcagaUCGCAcuggccgAACAGGGc -3' miRNA: 3'- -GCU--UGAGUGGUGGU---------GGCGU-------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 29112 | 0.7 | 0.71042 |
Target: 5'- gGGACUUGCUGCCGgucaCGCGcGCGAGGc -3' miRNA: 3'- gCUUGAGUGGUGGUg---GCGUuUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 15816 | 0.7 | 0.687819 |
Target: 5'- ---cCUCgGCCACCACCGC--GCAGGa -3' miRNA: 3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13929 | 0.7 | 0.721602 |
Target: 5'- gCGAugUCGCgCAgCGCCGUGGACu-GGa -3' miRNA: 3'- -GCUugAGUG-GUgGUGGCGUUUGuuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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