Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26776 | 5' | -50.4 | NC_005808.1 | + | 459 | 0.68 | 0.796418 |
Target: 5'- --uGCUCGCCgcgcACCACCGCuucGACAAu- -3' miRNA: 3'- gcuUGAGUGG----UGGUGGCGu--UUGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 1314 | 0.68 | 0.816297 |
Target: 5'- aGGGCgacgGCCACCagGCCGaCAAgcGCGAGGa -3' miRNA: 3'- gCUUGag--UGGUGG--UGGC-GUU--UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 2828 | 0.73 | 0.513934 |
Target: 5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3' miRNA: 3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 4564 | 0.67 | 0.844503 |
Target: 5'- cCGAAgUCGCCGaggCGCUGCucggugcgccAGGCGAGGa -3' miRNA: 3'- -GCUUgAGUGGUg--GUGGCG----------UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 4993 | 0.66 | 0.901399 |
Target: 5'- ---gUUCGCCGCUACCGCAuuGAUAuuguuGGc -3' miRNA: 3'- gcuuGAGUGGUGGUGGCGU--UUGUu----CC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 5359 | 0.71 | 0.664984 |
Target: 5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3' miRNA: 3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6421 | 0.7 | 0.708174 |
Target: 5'- uCGAACUCguccucgcucgcgacACCACCGcCCGCGAaggcgucgccgucgcGCAGGa -3' miRNA: 3'- -GCUUGAG---------------UGGUGGU-GGCGUU---------------UGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6461 | 0.66 | 0.894108 |
Target: 5'- cCGAACUCACgCACCAC-GaccAUGAGGc -3' miRNA: 3'- -GCUUGAGUG-GUGGUGgCguuUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6572 | 0.71 | 0.642015 |
Target: 5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3' miRNA: 3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 7481 | 0.66 | 0.908396 |
Target: 5'- aGGACUCgACCAgauCgACCGCGcccAGCAGGu -3' miRNA: 3'- gCUUGAG-UGGU---GgUGGCGU---UUGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 8741 | 0.66 | 0.908396 |
Target: 5'- gCGGGCgCGgCGCUACCGUcAACAuGGa -3' miRNA: 3'- -GCUUGaGUgGUGGUGGCGuUUGUuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 10676 | 0.67 | 0.862107 |
Target: 5'- uCGAGCagCGCCucgaaaCGCCGCAGGCAc-- -3' miRNA: 3'- -GCUUGa-GUGGug----GUGGCGUUUGUucc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13268 | 0.79 | 0.268722 |
Target: 5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3' miRNA: 3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13579 | 0.67 | 0.862107 |
Target: 5'- uGAACgcgCGCuCGCCAUCGCucACcuGGa -3' miRNA: 3'- gCUUGa--GUG-GUGGUGGCGuuUGuuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13929 | 0.7 | 0.721602 |
Target: 5'- gCGAugUCGCgCAgCGCCGUGGACu-GGa -3' miRNA: 3'- -GCUugAGUG-GUgGUGGCGUUUGuuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13973 | 0.66 | 0.886527 |
Target: 5'- gGAACUgGCCgGCCucauCCGCGcccgguuCAAGGa -3' miRNA: 3'- gCUUGAgUGG-UGGu---GGCGUuu-----GUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 14770 | 0.68 | 0.796418 |
Target: 5'- -cGGC-CGgCGCCACCGCGGgcagcgcgcGCGAGGa -3' miRNA: 3'- gcUUGaGUgGUGGUGGCGUU---------UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 15816 | 0.7 | 0.687819 |
Target: 5'- ---cCUCgGCCACCACCGC--GCAGGa -3' miRNA: 3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 16601 | 0.76 | 0.356918 |
Target: 5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3' miRNA: 3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 17191 | 0.72 | 0.607514 |
Target: 5'- cCGGGCugauuUCGCCGCCGCCGaagGAGCGuugcAGGa -3' miRNA: 3'- -GCUUG-----AGUGGUGGUGGCg--UUUGU----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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