miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26776 5' -50.4 NC_005808.1 + 17415 0.68 0.796418
Target:  5'- gCGuGCUCAugacauucaacCCGCCgACCaCGAGCGAGGg -3'
miRNA:   3'- -GCuUGAGU-----------GGUGG-UGGcGUUUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 18041 0.71 0.664984
Target:  5'- cCGGcCUCGCCAUCGCCGCGcugcGCGAc- -3'
miRNA:   3'- -GCUuGAGUGGUGGUGGCGUu---UGUUcc -5'
26776 5' -50.4 NC_005808.1 + 18082 0.69 0.775789
Target:  5'- uGGGC-CGCCgaaGCCGgCGCGAACcAGGa -3'
miRNA:   3'- gCUUGaGUGG---UGGUgGCGUUUGuUCC- -5'
26776 5' -50.4 NC_005808.1 + 19093 0.67 0.844503
Target:  5'- gCGcGCUCGCggaACUGCCGCAGGuCGAGa -3'
miRNA:   3'- -GCuUGAGUGg--UGGUGGCGUUU-GUUCc -5'
26776 5' -50.4 NC_005808.1 + 19396 0.69 0.775789
Target:  5'- cCGAAUUCACCgacgagGCCGaccugcugcugUCGCAccAGCAGGGg -3'
miRNA:   3'- -GCUUGAGUGG------UGGU-----------GGCGU--UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 19937 0.68 0.835331
Target:  5'- cCGAACUC-CUugUcgGCCGUGGACAGGc -3'
miRNA:   3'- -GCUUGAGuGGugG--UGGCGUUUGUUCc -5'
26776 5' -50.4 NC_005808.1 + 20158 0.68 0.816297
Target:  5'- cCGAACUgGacgaguCCGCCGCCGU---CAAGGc -3'
miRNA:   3'- -GCUUGAgU------GGUGGUGGCGuuuGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 20353 0.7 0.721602
Target:  5'- gCGAAUaCGCCAUCGCgGCcGACAaccAGGg -3'
miRNA:   3'- -GCUUGaGUGGUGGUGgCGuUUGU---UCC- -5'
26776 5' -50.4 NC_005808.1 + 20527 0.68 0.796418
Target:  5'- uCGAGC-CGCgCGCCgACCGCGAcccgaGCAAGc -3'
miRNA:   3'- -GCUUGaGUG-GUGG-UGGCGUU-----UGUUCc -5'
26776 5' -50.4 NC_005808.1 + 21153 0.69 0.75451
Target:  5'- --uGC-CGCCcCCGCCGCAGgaaauGCAGGGc -3'
miRNA:   3'- gcuUGaGUGGuGGUGGCGUU-----UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 21325 0.69 0.75451
Target:  5'- uCGGGCUUgauGCCgGCCACCGCGccCAGGu -3'
miRNA:   3'- -GCUUGAG---UGG-UGGUGGCGUuuGUUCc -5'
26776 5' -50.4 NC_005808.1 + 21929 0.71 0.676425
Target:  5'- aGAugUCACCGCCgACCaagGCccAACGGGGc -3'
miRNA:   3'- gCUugAGUGGUGG-UGG---CGu-UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 22749 0.74 0.484691
Target:  5'- cCGAACUCACCA-CGCUGCuGAACAAa- -3'
miRNA:   3'- -GCUUGAGUGGUgGUGGCG-UUUGUUcc -5'
26776 5' -50.4 NC_005808.1 + 23229 0.66 0.908396
Target:  5'- uCGGcCUCgGCCACCgACCGCGccucGCuGGGg -3'
miRNA:   3'- -GCUuGAG-UGGUGG-UGGCGUu---UGuUCC- -5'
26776 5' -50.4 NC_005808.1 + 23727 0.66 0.894108
Target:  5'- uCGAACUCAUC-CCgaaCGUggGCAuGGg -3'
miRNA:   3'- -GCUUGAGUGGuGGug-GCGuuUGUuCC- -5'
26776 5' -50.4 NC_005808.1 + 24017 0.69 0.765224
Target:  5'- uCGGACggccagGCCGUCACCGCGAGCGcGGc -3'
miRNA:   3'- -GCUUGag----UGGUGGUGGCGUUUGUuCC- -5'
26776 5' -50.4 NC_005808.1 + 24204 0.7 0.732686
Target:  5'- cCGAcgUgGCCGCCACCgGCGccaucGGCAAGGc -3'
miRNA:   3'- -GCUugAgUGGUGGUGG-CGU-----UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 24241 0.66 0.894108
Target:  5'- ---cCUCGCCGCCG--GCAAACAGGu -3'
miRNA:   3'- gcuuGAGUGGUGGUggCGUUUGUUCc -5'
26776 5' -50.4 NC_005808.1 + 24379 0.66 0.894108
Target:  5'- gCGcAUUCGCCACCACaacuCGCugcGCAAGu -3'
miRNA:   3'- -GCuUGAGUGGUGGUG----GCGuu-UGUUCc -5'
26776 5' -50.4 NC_005808.1 + 25468 0.67 0.878662
Target:  5'- gCGGcCUCGCCAUCuGCCGCAAcuuCGuGGu -3'
miRNA:   3'- -GCUuGAGUGGUGG-UGGCGUUu--GUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.