miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26776 5' -50.4 NC_005808.1 + 42357 0.68 0.835331
Target:  5'- gGGAUUCGCUACCGCCGgCccuACAAc- -3'
miRNA:   3'- gCUUGAGUGGUGGUGGC-Guu-UGUUcc -5'
26776 5' -50.4 NC_005808.1 + 42088 0.66 0.908396
Target:  5'- aGAAC-CGCCugcaaGCCGCCGCGGcGCAGu- -3'
miRNA:   3'- gCUUGaGUGG-----UGGUGGCGUU-UGUUcc -5'
26776 5' -50.4 NC_005808.1 + 41447 0.71 0.65351
Target:  5'- gGGGCgUgACCGCCGCCGUAGcGCGAGc -3'
miRNA:   3'- gCUUG-AgUGGUGGUGGCGUU-UGUUCc -5'
26776 5' -50.4 NC_005808.1 + 40371 0.68 0.816297
Target:  5'- aCGcGC-CGCCugCugCGCGuggugcuacccGACGAGGg -3'
miRNA:   3'- -GCuUGaGUGGugGugGCGU-----------UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 40054 0.66 0.901399
Target:  5'- aCGAGCgcgGCCcCUACCGCGAAUuccuGGu -3'
miRNA:   3'- -GCUUGag-UGGuGGUGGCGUUUGuu--CC- -5'
26776 5' -50.4 NC_005808.1 + 39128 0.66 0.915095
Target:  5'- uCGAACUCGC-----CCGCGAACAucGGGg -3'
miRNA:   3'- -GCUUGAGUGgugguGGCGUUUGU--UCC- -5'
26776 5' -50.4 NC_005808.1 + 38863 0.67 0.844503
Target:  5'- cCGAcguGCcCACCACCGgCGUGAACGgcacGGGc -3'
miRNA:   3'- -GCU---UGaGUGGUGGUgGCGUUUGU----UCC- -5'
26776 5' -50.4 NC_005808.1 + 38767 0.66 0.886527
Target:  5'- cCGAGgUCAugacUCACCACgGCAAGCGc-- -3'
miRNA:   3'- -GCUUgAGU----GGUGGUGgCGUUUGUucc -5'
26776 5' -50.4 NC_005808.1 + 38429 0.68 0.816297
Target:  5'- -uGGCUaCACCucgACCACgGCGcGCAAGGu -3'
miRNA:   3'- gcUUGA-GUGG---UGGUGgCGUuUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 38400 0.66 0.901399
Target:  5'- gCGAcguGCUCGCgGCCAacaugcCCGCcauCGAGGc -3'
miRNA:   3'- -GCU---UGAGUGgUGGU------GGCGuuuGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 37681 0.66 0.897059
Target:  5'- gCGGGCaUCGCUGCCgacguuuccaccgugGCCGaAAACGAGGc -3'
miRNA:   3'- -GCUUG-AGUGGUGG---------------UGGCgUUUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 35087 0.66 0.894108
Target:  5'- uCGGACgccgaaagCGCgCGCCGCCaGUu-GCAAGGg -3'
miRNA:   3'- -GCUUGa-------GUG-GUGGUGG-CGuuUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 34989 0.68 0.835331
Target:  5'- -uGAC-CAUCACCACgGCAGACGGa- -3'
miRNA:   3'- gcUUGaGUGGUGGUGgCGUUUGUUcc -5'
26776 5' -50.4 NC_005808.1 + 34753 0.66 0.908396
Target:  5'- gCGaAGCcCGCCucACCAUCGCGcugaacaugggcAACGAGGg -3'
miRNA:   3'- -GC-UUGaGUGG--UGGUGGCGU------------UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 34393 0.74 0.495432
Target:  5'- aCGAACUgGCCGCCAugUCGCuGACGAacGGg -3'
miRNA:   3'- -GCUUGAgUGGUGGU--GGCGuUUGUU--CC- -5'
26776 5' -50.4 NC_005808.1 + 34378 0.67 0.878662
Target:  5'- uGAcgGC-CGCCgACCAgCGCGAcuACGAGGc -3'
miRNA:   3'- gCU--UGaGUGG-UGGUgGCGUU--UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 33970 0.73 0.52827
Target:  5'- gCGAcCUCGCCACCGCaGCGGcCGAGa -3'
miRNA:   3'- -GCUuGAGUGGUGGUGgCGUUuGUUCc -5'
26776 5' -50.4 NC_005808.1 + 33640 0.69 0.765224
Target:  5'- gCGAAUccggCACgGCCACCGCuGGCGAa- -3'
miRNA:   3'- -GCUUGa---GUGgUGGUGGCGuUUGUUcc -5'
26776 5' -50.4 NC_005808.1 + 33598 0.68 0.816297
Target:  5'- gCGAAUccggCACgGCCACCGCuggcGGCAcGGc -3'
miRNA:   3'- -GCUUGa---GUGgUGGUGGCGu---UUGUuCC- -5'
26776 5' -50.4 NC_005808.1 + 33584 0.7 0.714904
Target:  5'- aCGAACUggugCGCCGCCugcuggaagcgcccCCGCGcGGCGAGGa -3'
miRNA:   3'- -GCUUGA----GUGGUGGu-------------GGCGU-UUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.