Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26776 | 5' | -50.4 | NC_005808.1 | + | 13268 | 0.79 | 0.268722 |
Target: 5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3' miRNA: 3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 21153 | 0.69 | 0.75451 |
Target: 5'- --uGC-CGCCcCCGCCGCAGgaaauGCAGGGc -3' miRNA: 3'- gcuUGaGUGGuGGUGGCGUU-----UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 24017 | 0.69 | 0.765224 |
Target: 5'- uCGGACggccagGCCGUCACCGCGAGCGcGGc -3' miRNA: 3'- -GCUUGag----UGGUGGUGGCGUUUGUuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 39128 | 0.66 | 0.915095 |
Target: 5'- uCGAACUCGC-----CCGCGAACAucGGGg -3' miRNA: 3'- -GCUUGAGUGgugguGGCGUUUGU--UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 2828 | 0.73 | 0.513934 |
Target: 5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3' miRNA: 3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33970 | 0.73 | 0.52827 |
Target: 5'- gCGAcCUCGCCACCGCaGCGGcCGAGa -3' miRNA: 3'- -GCUuGAGUGGUGGUGgCGUUuGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33036 | 0.71 | 0.629358 |
Target: 5'- cCGGauGCUCGCCACCGgcgagcagaUCGCAcuggccgAACAGGGc -3' miRNA: 3'- -GCU--UGAGUGGUGGU---------GGCGU-------UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6572 | 0.71 | 0.642015 |
Target: 5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3' miRNA: 3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 18041 | 0.71 | 0.664984 |
Target: 5'- cCGGcCUCGCCAUCGCCGCGcugcGCGAc- -3' miRNA: 3'- -GCUuGAGUGGUGGUGGCGUu---UGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 24204 | 0.7 | 0.732686 |
Target: 5'- cCGAcgUgGCCGCCACCgGCGccaucGGCAAGGc -3' miRNA: 3'- -GCUugAgUGGUGGUGG-CGU-----UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33584 | 0.7 | 0.714904 |
Target: 5'- aCGAACUggugCGCCGCCugcuggaagcgcccCCGCGcGGCGAGGa -3' miRNA: 3'- -GCUUGA----GUGGUGGu-------------GGCGU-UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 5359 | 0.71 | 0.664984 |
Target: 5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3' miRNA: 3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 16601 | 0.76 | 0.356918 |
Target: 5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3' miRNA: 3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 20353 | 0.7 | 0.721602 |
Target: 5'- gCGAAUaCGCCAUCGCgGCcGACAaccAGGg -3' miRNA: 3'- -GCUUGaGUGGUGGUGgCGuUUGU---UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 22749 | 0.74 | 0.484691 |
Target: 5'- cCGAACUCACCA-CGCUGCuGAACAAa- -3' miRNA: 3'- -GCUUGAGUGGUgGUGGCG-UUUGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 41447 | 0.71 | 0.65351 |
Target: 5'- gGGGCgUgACCGCCGCCGUAGcGCGAGc -3' miRNA: 3'- gCUUG-AgUGGUGGUGGCGUU-UGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 30296 | 0.7 | 0.721602 |
Target: 5'- aCGAAUUCGaCGCCGCCGUAGccgGCAcgcuGGGc -3' miRNA: 3'- -GCUUGAGUgGUGGUGGCGUU---UGU----UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33392 | 0.69 | 0.75451 |
Target: 5'- aGAACgugCGCCG-CGCCGcCGAGCAGGc -3' miRNA: 3'- gCUUGa--GUGGUgGUGGC-GUUUGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 27273 | 0.74 | 0.495432 |
Target: 5'- -cGGCUCACCGCCugCacucaaGAGCGAGGa -3' miRNA: 3'- gcUUGAGUGGUGGugGcg----UUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 28972 | 0.72 | 0.57322 |
Target: 5'- cCGGACUUgcuGCCGCUACCGaugcugucGGCAAGGu -3' miRNA: 3'- -GCUUGAG---UGGUGGUGGCgu------UUGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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