Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26776 | 5' | -50.4 | NC_005808.1 | + | 20527 | 0.68 | 0.796418 |
Target: 5'- uCGAGC-CGCgCGCCgACCGCGAcccgaGCAAGc -3' miRNA: 3'- -GCUUGaGUG-GUGG-UGGCGUU-----UGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 14770 | 0.68 | 0.796418 |
Target: 5'- -cGGC-CGgCGCCACCGCGGgcagcgcgcGCGAGGa -3' miRNA: 3'- gcUUGaGUgGUGGUGGCGUU---------UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 17415 | 0.68 | 0.796418 |
Target: 5'- gCGuGCUCAugacauucaacCCGCCgACCaCGAGCGAGGg -3' miRNA: 3'- -GCuUGAGU-----------GGUGG-UGGcGUUUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 459 | 0.68 | 0.796418 |
Target: 5'- --uGCUCGCCgcgcACCACCGCuucGACAAu- -3' miRNA: 3'- gcuUGAGUGG----UGGUGGCGu--UUGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 25860 | 0.69 | 0.786191 |
Target: 5'- aCGAGCgUgACCGCCACguCGaacAACAAGGg -3' miRNA: 3'- -GCUUG-AgUGGUGGUG--GCgu-UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 18082 | 0.69 | 0.775789 |
Target: 5'- uGGGC-CGCCgaaGCCGgCGCGAACcAGGa -3' miRNA: 3'- gCUUGaGUGG---UGGUgGCGUUUGuUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 19396 | 0.69 | 0.775789 |
Target: 5'- cCGAAUUCACCgacgagGCCGaccugcugcugUCGCAccAGCAGGGg -3' miRNA: 3'- -GCUUGAGUGG------UGGU-----------GGCGU--UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 31243 | 0.69 | 0.765224 |
Target: 5'- gCGAGCagGUCGCCACCGUAcuGCAAGa -3' miRNA: 3'- -GCUUGagUGGUGGUGGCGUu-UGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 24017 | 0.69 | 0.765224 |
Target: 5'- uCGGACggccagGCCGUCACCGCGAGCGcGGc -3' miRNA: 3'- -GCUUGag----UGGUGGUGGCGUUUGUuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33640 | 0.69 | 0.765224 |
Target: 5'- gCGAAUccggCACgGCCACCGCuGGCGAa- -3' miRNA: 3'- -GCUUGa---GUGgUGGUGGCGuUUGUUcc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33392 | 0.69 | 0.75451 |
Target: 5'- aGAACgugCGCCG-CGCCGcCGAGCAGGc -3' miRNA: 3'- gCUUGa--GUGGUgGUGGC-GUUUGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 21153 | 0.69 | 0.75451 |
Target: 5'- --uGC-CGCCcCCGCCGCAGgaaauGCAGGGc -3' miRNA: 3'- gcuUGaGUGGuGGUGGCGUU-----UGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 21325 | 0.69 | 0.75451 |
Target: 5'- uCGGGCUUgauGCCgGCCACCGCGccCAGGu -3' miRNA: 3'- -GCUUGAG---UGG-UGGUGGCGUuuGUUCc -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 24204 | 0.7 | 0.732686 |
Target: 5'- cCGAcgUgGCCGCCACCgGCGccaucGGCAAGGc -3' miRNA: 3'- -GCUugAgUGGUGGUGG-CGU-----UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 20353 | 0.7 | 0.721602 |
Target: 5'- gCGAAUaCGCCAUCGCgGCcGACAaccAGGg -3' miRNA: 3'- -GCUUGaGUGGUGGUGgCGuUUGU---UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 30296 | 0.7 | 0.721602 |
Target: 5'- aCGAAUUCGaCGCCGCCGUAGccgGCAcgcuGGGc -3' miRNA: 3'- -GCUUGAGUgGUGGUGGCGUU---UGU----UCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 13929 | 0.7 | 0.721602 |
Target: 5'- gCGAugUCGCgCAgCGCCGUGGACu-GGa -3' miRNA: 3'- -GCUugAGUG-GUgGUGGCGUUUGuuCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 33584 | 0.7 | 0.714904 |
Target: 5'- aCGAACUggugCGCCGCCugcuggaagcgcccCCGCGcGGCGAGGa -3' miRNA: 3'- -GCUUGA----GUGGUGGu-------------GGCGU-UUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 29112 | 0.7 | 0.71042 |
Target: 5'- gGGACUUGCUGCCGgucaCGCGcGCGAGGc -3' miRNA: 3'- gCUUGAGUGGUGGUg---GCGUuUGUUCC- -5' |
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26776 | 5' | -50.4 | NC_005808.1 | + | 6421 | 0.7 | 0.708174 |
Target: 5'- uCGAACUCguccucgcucgcgacACCACCGcCCGCGAaggcgucgccgucgcGCAGGa -3' miRNA: 3'- -GCUUGAG---------------UGGUGGU-GGCGUU---------------UGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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