miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26776 5' -50.4 NC_005808.1 + 25468 0.67 0.878662
Target:  5'- gCGGcCUCGCCAUCuGCCGCAAcuuCGuGGu -3'
miRNA:   3'- -GCUuGAGUGGUGG-UGGCGUUu--GUuCC- -5'
26776 5' -50.4 NC_005808.1 + 34378 0.67 0.878662
Target:  5'- uGAcgGC-CGCCgACCAgCGCGAcuACGAGGc -3'
miRNA:   3'- gCU--UGaGUGG-UGGUgGCGUU--UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 10676 0.67 0.862107
Target:  5'- uCGAGCagCGCCucgaaaCGCCGCAGGCAc-- -3'
miRNA:   3'- -GCUUGa-GUGGug----GUGGCGUUUGUucc -5'
26776 5' -50.4 NC_005808.1 + 13579 0.67 0.862107
Target:  5'- uGAACgcgCGCuCGCCAUCGCucACcuGGa -3'
miRNA:   3'- gCUUGa--GUG-GUGGUGGCGuuUGuuCC- -5'
26776 5' -50.4 NC_005808.1 + 32827 0.67 0.856933
Target:  5'- uCGGACUaCACCagccgcaacggcuucGCCugGCCGCAGACGGucGGc -3'
miRNA:   3'- -GCUUGA-GUGG---------------UGG--UGGCGUUUGUU--CC- -5'
26776 5' -50.4 NC_005808.1 + 32701 0.67 0.853432
Target:  5'- cCGAcguGCUCGCCGCgUGCaaucagGCGAugGAGGg -3'
miRNA:   3'- -GCU---UGAGUGGUG-GUGg-----CGUUugUUCC- -5'
26776 5' -50.4 NC_005808.1 + 38863 0.67 0.844503
Target:  5'- cCGAcguGCcCACCACCGgCGUGAACGgcacGGGc -3'
miRNA:   3'- -GCU---UGaGUGGUGGUgGCGUUUGU----UCC- -5'
26776 5' -50.4 NC_005808.1 + 4564 0.67 0.844503
Target:  5'- cCGAAgUCGCCGaggCGCUGCucggugcgccAGGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCG----------UUUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 32308 0.67 0.844503
Target:  5'- gCGAcCUCAUCGCCGCCau---CAAGGc -3'
miRNA:   3'- -GCUuGAGUGGUGGUGGcguuuGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 19093 0.67 0.844503
Target:  5'- gCGcGCUCGCggaACUGCCGCAGGuCGAGa -3'
miRNA:   3'- -GCuUGAGUGg--UGGUGGCGUUU-GUUCc -5'
26776 5' -50.4 NC_005808.1 + 19937 0.68 0.835331
Target:  5'- cCGAACUC-CUugUcgGCCGUGGACAGGc -3'
miRNA:   3'- -GCUUGAGuGGugG--UGGCGUUUGUUCc -5'
26776 5' -50.4 NC_005808.1 + 42357 0.68 0.835331
Target:  5'- gGGAUUCGCUACCGCCGgCccuACAAc- -3'
miRNA:   3'- gCUUGAGUGGUGGUGGC-Guu-UGUUcc -5'
26776 5' -50.4 NC_005808.1 + 26735 0.68 0.835331
Target:  5'- cCGGGC-CACCGCCagcgcgcccGCUGCGAuuccAUAAGGc -3'
miRNA:   3'- -GCUUGaGUGGUGG---------UGGCGUU----UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 31474 0.68 0.835331
Target:  5'- cCGAacuGCUCGCacguuugaACCaauugGCCGCAgccGACAAGGu -3'
miRNA:   3'- -GCU---UGAGUGg-------UGG-----UGGCGU---UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 34989 0.68 0.835331
Target:  5'- -uGAC-CAUCACCACgGCAGACGGa- -3'
miRNA:   3'- gcUUGaGUGGUGGUGgCGUUUGUUcc -5'
26776 5' -50.4 NC_005808.1 + 20158 0.68 0.816297
Target:  5'- cCGAACUgGacgaguCCGCCGCCGU---CAAGGc -3'
miRNA:   3'- -GCUUGAgU------GGUGGUGGCGuuuGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 40371 0.68 0.816297
Target:  5'- aCGcGC-CGCCugCugCGCGuggugcuacccGACGAGGg -3'
miRNA:   3'- -GCuUGaGUGGugGugGCGU-----------UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 33598 0.68 0.816297
Target:  5'- gCGAAUccggCACgGCCACCGCuggcGGCAcGGc -3'
miRNA:   3'- -GCUUGa---GUGgUGGUGGCGu---UUGUuCC- -5'
26776 5' -50.4 NC_005808.1 + 38429 0.68 0.816297
Target:  5'- -uGGCUaCACCucgACCACgGCGcGCAAGGu -3'
miRNA:   3'- gcUUGA-GUGG---UGGUGgCGUuUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 1314 0.68 0.816297
Target:  5'- aGGGCgacgGCCACCagGCCGaCAAgcGCGAGGa -3'
miRNA:   3'- gCUUGag--UGGUGG--UGGC-GUU--UGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.