miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 5' -60.8 NC_005808.1 + 32439 1.11 0.000174
Target:  5'- aCGACGGCAGCGACUGCCCCUACGCCCc -3'
miRNA:   3'- -GCUGCCGUCGCUGACGGGGAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 29260 0.78 0.056418
Target:  5'- gCGAcuuCGGCGGCGAcCUGCCgaaagCCUACGCCg -3'
miRNA:   3'- -GCU---GCCGUCGCU-GACGG-----GGAUGCGGg -5'
26778 5' -60.8 NC_005808.1 + 32521 0.76 0.076953
Target:  5'- gGAUGGCA-CGGCUcGCCCCgacgACGCCUc -3'
miRNA:   3'- gCUGCCGUcGCUGA-CGGGGa---UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 37445 0.75 0.098911
Target:  5'- gGGCGugaGCAGCGACgGCCgCCUGCGCg- -3'
miRNA:   3'- gCUGC---CGUCGCUGaCGG-GGAUGCGgg -5'
26778 5' -60.8 NC_005808.1 + 38722 0.74 0.107465
Target:  5'- gCGACGGCAGCG-CgGCCUacagcgacgGCGCCUg -3'
miRNA:   3'- -GCUGCCGUCGCuGaCGGGga-------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 18467 0.74 0.107465
Target:  5'- aGGCGcGCAGcCGGCUGgacuacgaCCCCUACGCgCg -3'
miRNA:   3'- gCUGC-CGUC-GCUGAC--------GGGGAUGCGgG- -5'
26778 5' -60.8 NC_005808.1 + 13667 0.73 0.130191
Target:  5'- uCGAUGGCAGCGGCgagGCCCUg--GCUUu -3'
miRNA:   3'- -GCUGCCGUCGCUGa--CGGGGaugCGGG- -5'
26778 5' -60.8 NC_005808.1 + 248 0.72 0.145098
Target:  5'- cCGGCGGUAGCGAau-CCCCagGCGCUUg -3'
miRNA:   3'- -GCUGCCGUCGCUgacGGGGa-UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 38065 0.72 0.145098
Target:  5'- gCGGCGGCA-CGACcGCCCagcACGCCa -3'
miRNA:   3'- -GCUGCCGUcGCUGaCGGGga-UGCGGg -5'
26778 5' -60.8 NC_005808.1 + 26585 0.72 0.153122
Target:  5'- -aACGGUuucgucaccGGCGAcCUGUCCCUGCGCgCg -3'
miRNA:   3'- gcUGCCG---------UCGCU-GACGGGGAUGCGgG- -5'
26778 5' -60.8 NC_005808.1 + 14818 0.71 0.174968
Target:  5'- --uCGGCGGCG-CUGCCUu--CGCCCa -3'
miRNA:   3'- gcuGCCGUCGCuGACGGGgauGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 8671 0.71 0.174968
Target:  5'- --gUGuGCAGCGGCUGCUgCgcCGCCCa -3'
miRNA:   3'- gcuGC-CGUCGCUGACGGgGauGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 13700 0.71 0.184459
Target:  5'- aCGAgUGGuCGGCGACgGCCagcaaCUACGCCa -3'
miRNA:   3'- -GCU-GCC-GUCGCUGaCGGg----GAUGCGGg -5'
26778 5' -60.8 NC_005808.1 + 41486 0.7 0.199546
Target:  5'- uCGACGGCaAGCcuUUGCCgCCUACcGCCg -3'
miRNA:   3'- -GCUGCCG-UCGcuGACGG-GGAUG-CGGg -5'
26778 5' -60.8 NC_005808.1 + 40211 0.7 0.210193
Target:  5'- ---aGGCAGCGACcGCCaugCCgUGCGCCUc -3'
miRNA:   3'- gcugCCGUCGCUGaCGG---GG-AUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 36191 0.7 0.215697
Target:  5'- aCGACaugGGCcGCGACUacaccgggccgGCCggCCUGCGCCUg -3'
miRNA:   3'- -GCUG---CCGuCGCUGA-----------CGG--GGAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 28187 0.69 0.232362
Target:  5'- aGGCGcGCcuGGCGAC-GCCCagcuucgCUACGCCUa -3'
miRNA:   3'- gCUGC-CG--UCGCUGaCGGG-------GAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 4913 0.69 0.232955
Target:  5'- uCGACaGGuCGGCGACgaccagcuucuUGCCCUcggGCGCCa -3'
miRNA:   3'- -GCUG-CC-GUCGCUG-----------ACGGGGa--UGCGGg -5'
26778 5' -60.8 NC_005808.1 + 8141 0.69 0.245096
Target:  5'- uGugGGCGuGCGggugucggcGCUGCguCCCUgcgcguGCGCCCg -3'
miRNA:   3'- gCugCCGU-CGC---------UGACG--GGGA------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 9209 0.69 0.251361
Target:  5'- uCGGCGGC-GCGGCgcacGUUCUgcggcGCGCCCg -3'
miRNA:   3'- -GCUGCCGuCGCUGa---CGGGGa----UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.