miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 5' -60.8 NC_005808.1 + 8610 0.69 0.251361
Target:  5'- gGAUGGCGuaGGCgugGCCggUACGCCCu -3'
miRNA:   3'- gCUGCCGUcgCUGa--CGGggAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 10694 0.69 0.257757
Target:  5'- uGACGGCAGCGcgcACgGCCUCg--GCCg -3'
miRNA:   3'- gCUGCCGUCGC---UGaCGGGGaugCGGg -5'
26778 5' -60.8 NC_005808.1 + 23654 0.69 0.257757
Target:  5'- gCGGCgGGCAGCaACUGCaCCagGCGaCCCu -3'
miRNA:   3'- -GCUG-CCGUCGcUGACG-GGgaUGC-GGG- -5'
26778 5' -60.8 NC_005808.1 + 26033 0.69 0.257757
Target:  5'- gCGAUGGCAucaaagcccgcGCGGCgggcgcGCUCCaUGCGCUCg -3'
miRNA:   3'- -GCUGCCGU-----------CGCUGa-----CGGGG-AUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 5154 0.69 0.257757
Target:  5'- aGGCGGCcGUcGCUGCUC--ACGCCCu -3'
miRNA:   3'- gCUGCCGuCGcUGACGGGgaUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 4757 0.68 0.268267
Target:  5'- -cACGGCcGCGAUguucucggcguucGCCCacaCUGCGCCCa -3'
miRNA:   3'- gcUGCCGuCGCUGa------------CGGG---GAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 2425 0.68 0.270948
Target:  5'- uGuACGGCAGCaGGCcgGCCUCgaagaucgGCGCCa -3'
miRNA:   3'- gC-UGCCGUCG-CUGa-CGGGGa-------UGCGGg -5'
26778 5' -60.8 NC_005808.1 + 687 0.68 0.270948
Target:  5'- aCGGCGGCgccGGCcgGGCcGCCCaagaUAcCGCCCa -3'
miRNA:   3'- -GCUGCCG---UCG--CUGaCGGGg---AU-GCGGG- -5'
26778 5' -60.8 NC_005808.1 + 36220 0.68 0.291745
Target:  5'- -cGCGGCGGcCGACcuggUGUaaCCCaGCGCCCc -3'
miRNA:   3'- gcUGCCGUC-GCUG----ACG--GGGaUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 14893 0.68 0.298949
Target:  5'- cCGGCGGCgAGCcGCUGCCg--GCGCgCg -3'
miRNA:   3'- -GCUGCCG-UCGcUGACGGggaUGCGgG- -5'
26778 5' -60.8 NC_005808.1 + 40271 0.67 0.30629
Target:  5'- gGACaGGCugcGCGAuCUGUgCCUgucgcuggACGCCCg -3'
miRNA:   3'- gCUG-CCGu--CGCU-GACGgGGA--------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 27707 0.67 0.30629
Target:  5'- gCGcCGGCAGCGGCUcGCCgCCggucauggACuugaugagGCCCu -3'
miRNA:   3'- -GCuGCCGUCGCUGA-CGG-GGa-------UG--------CGGG- -5'
26778 5' -60.8 NC_005808.1 + 29285 0.67 0.30629
Target:  5'- aCGugGuaGGCGACgaacugcugGCCCU--UGCCCa -3'
miRNA:   3'- -GCugCcgUCGCUGa--------CGGGGauGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 1044 0.67 0.30629
Target:  5'- cCGGCGGCAGCa--UGUCgCCgcgaaccgGCGUCCa -3'
miRNA:   3'- -GCUGCCGUCGcugACGG-GGa-------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 33079 0.67 0.313769
Target:  5'- gGuCGcGCAGCGACgcggcgGCCuacauCCU-CGCCCa -3'
miRNA:   3'- gCuGC-CGUCGCUGa-----CGG-----GGAuGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 37252 0.67 0.313769
Target:  5'- aGGCGGCcacgcAGCGcgaUGCCaugCUGCGCCa -3'
miRNA:   3'- gCUGCCG-----UCGCug-ACGGg--GAUGCGGg -5'
26778 5' -60.8 NC_005808.1 + 1157 0.67 0.313769
Target:  5'- aCGGCGGCGGUcAC-GCCCCacauagucuCGCCg -3'
miRNA:   3'- -GCUGCCGUCGcUGaCGGGGau-------GCGGg -5'
26778 5' -60.8 NC_005808.1 + 7895 0.67 0.319086
Target:  5'- gGGCGGC-GCGugcguagaucgccaGCUGCUCgUUGCGCUCg -3'
miRNA:   3'- gCUGCCGuCGC--------------UGACGGG-GAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 34321 0.67 0.321385
Target:  5'- --cCGGCAGCGug-GCCCUggaagccgaAUGCCCg -3'
miRNA:   3'- gcuGCCGUCGCugaCGGGGa--------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 34058 0.67 0.336234
Target:  5'- --uCGGC-GCGGCUGUCgagcguuucaucgCCUACGCCa -3'
miRNA:   3'- gcuGCCGuCGCUGACGG-------------GGAUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.