miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 5' -60.8 NC_005808.1 + 14851 0.66 0.361521
Target:  5'- aCGAgGGCAGCGAgUUGCgCgaGgGCCUc -3'
miRNA:   3'- -GCUgCCGUCGCU-GACGgGgaUgCGGG- -5'
26778 5' -60.8 NC_005808.1 + 41763 0.66 0.361521
Target:  5'- -cACGGuCGGCucGCUGUCUCUGCGCgCg -3'
miRNA:   3'- gcUGCC-GUCGc-UGACGGGGAUGCGgG- -5'
26778 5' -60.8 NC_005808.1 + 24910 0.66 0.353221
Target:  5'- --cCGGCccgAGUGGC-GCUucgCCUACGCCCa -3'
miRNA:   3'- gcuGCCG---UCGCUGaCGG---GGAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 34562 0.67 0.345057
Target:  5'- gGACGGCGGCaagGACgGCggCCCUAUGUg- -3'
miRNA:   3'- gCUGCCGUCG---CUGaCG--GGGAUGCGgg -5'
26778 5' -60.8 NC_005808.1 + 38352 0.67 0.345057
Target:  5'- aCGGcCGGCAcCGACUacGCCaUCUACGUCUg -3'
miRNA:   3'- -GCU-GCCGUcGCUGA--CGG-GGAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 31009 0.67 0.345057
Target:  5'- cCGGCGGcCAGcCGGCgGCCCUggGCGgCa -3'
miRNA:   3'- -GCUGCC-GUC-GCUGaCGGGGa-UGCgGg -5'
26778 5' -60.8 NC_005808.1 + 4923 0.67 0.345057
Target:  5'- aCGuCGGCAGCGA-UGCCCgCgACGgUCu -3'
miRNA:   3'- -GCuGCCGUCGCUgACGGG-GaUGCgGG- -5'
26778 5' -60.8 NC_005808.1 + 7218 0.67 0.345057
Target:  5'- -cACGGCAGCauCUGCgCC-GCGCUCa -3'
miRNA:   3'- gcUGCCGUCGcuGACGgGGaUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 32473 0.67 0.345057
Target:  5'- cCGA-GGUGGgGGCgGCCgaUGCGCCCg -3'
miRNA:   3'- -GCUgCCGUCgCUGaCGGggAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 17079 0.67 0.340224
Target:  5'- gCGGCGGCAaaaccgaccucaucGCGGgcCUGaCCCUgaccaagcacgagcGCGCCCu -3'
miRNA:   3'- -GCUGCCGU--------------CGCU--GACgGGGA--------------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 34127 0.67 0.337029
Target:  5'- gCGuCGGCuGCGGCaucgcagGCCaCCUcgACGCCg -3'
miRNA:   3'- -GCuGCCGuCGCUGa------CGG-GGA--UGCGGg -5'
26778 5' -60.8 NC_005808.1 + 8130 0.67 0.337029
Target:  5'- --uCGGCGGUGACUucccaGCCCUUGcCGUUCa -3'
miRNA:   3'- gcuGCCGUCGCUGA-----CGGGGAU-GCGGG- -5'
26778 5' -60.8 NC_005808.1 + 3699 0.67 0.337029
Target:  5'- -cACGGCGacGCG-CUGCCCCaugcgGCGCauCCg -3'
miRNA:   3'- gcUGCCGU--CGCuGACGGGGa----UGCG--GG- -5'
26778 5' -60.8 NC_005808.1 + 34058 0.67 0.336234
Target:  5'- --uCGGC-GCGGCUGUCgagcguuucaucgCCUACGCCa -3'
miRNA:   3'- gcuGCCGuCGCUGACGG-------------GGAUGCGGg -5'
26778 5' -60.8 NC_005808.1 + 34321 0.67 0.321385
Target:  5'- --cCGGCAGCGug-GCCCUggaagccgaAUGCCCg -3'
miRNA:   3'- gcuGCCGUCGCugaCGGGGa--------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 7895 0.67 0.319086
Target:  5'- gGGCGGC-GCGugcguagaucgccaGCUGCUCgUUGCGCUCg -3'
miRNA:   3'- gCUGCCGuCGC--------------UGACGGG-GAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 37252 0.67 0.313769
Target:  5'- aGGCGGCcacgcAGCGcgaUGCCaugCUGCGCCa -3'
miRNA:   3'- gCUGCCG-----UCGCug-ACGGg--GAUGCGGg -5'
26778 5' -60.8 NC_005808.1 + 1157 0.67 0.313769
Target:  5'- aCGGCGGCGGUcAC-GCCCCacauagucuCGCCg -3'
miRNA:   3'- -GCUGCCGUCGcUGaCGGGGau-------GCGGg -5'
26778 5' -60.8 NC_005808.1 + 33079 0.67 0.313769
Target:  5'- gGuCGcGCAGCGACgcggcgGCCuacauCCU-CGCCCa -3'
miRNA:   3'- gCuGC-CGUCGCUGa-----CGG-----GGAuGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 1044 0.67 0.30629
Target:  5'- cCGGCGGCAGCa--UGUCgCCgcgaaccgGCGUCCa -3'
miRNA:   3'- -GCUGCCGUCGcugACGG-GGa-------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.