miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 5' -60.8 NC_005808.1 + 32439 1.11 0.000174
Target:  5'- aCGACGGCAGCGACUGCCCCUACGCCCc -3'
miRNA:   3'- -GCUGCCGUCGCUGACGGGGAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 37445 0.75 0.098911
Target:  5'- gGGCGugaGCAGCGACgGCCgCCUGCGCg- -3'
miRNA:   3'- gCUGC---CGUCGCUGaCGG-GGAUGCGgg -5'
26778 5' -60.8 NC_005808.1 + 14818 0.71 0.174968
Target:  5'- --uCGGCGGCG-CUGCCUu--CGCCCa -3'
miRNA:   3'- gcuGCCGUCGCuGACGGGgauGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 41486 0.7 0.199546
Target:  5'- uCGACGGCaAGCcuUUGCCgCCUACcGCCg -3'
miRNA:   3'- -GCUGCCG-UCGcuGACGG-GGAUG-CGGg -5'
26778 5' -60.8 NC_005808.1 + 40211 0.7 0.210193
Target:  5'- ---aGGCAGCGACcGCCaugCCgUGCGCCUc -3'
miRNA:   3'- gcugCCGUCGCUGaCGG---GG-AUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 8141 0.69 0.245096
Target:  5'- uGugGGCGuGCGggugucggcGCUGCguCCCUgcgcguGCGCCCg -3'
miRNA:   3'- gCugCCGU-CGC---------UGACG--GGGA------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 9209 0.69 0.251361
Target:  5'- uCGGCGGC-GCGGCgcacGUUCUgcggcGCGCCCg -3'
miRNA:   3'- -GCUGCCGuCGCUGa---CGGGGa----UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 10694 0.69 0.257757
Target:  5'- uGACGGCAGCGcgcACgGCCUCg--GCCg -3'
miRNA:   3'- gCUGCCGUCGC---UGaCGGGGaugCGGg -5'
26778 5' -60.8 NC_005808.1 + 23654 0.69 0.257757
Target:  5'- gCGGCgGGCAGCaACUGCaCCagGCGaCCCu -3'
miRNA:   3'- -GCUG-CCGUCGcUGACG-GGgaUGC-GGG- -5'
26778 5' -60.8 NC_005808.1 + 26033 0.69 0.257757
Target:  5'- gCGAUGGCAucaaagcccgcGCGGCgggcgcGCUCCaUGCGCUCg -3'
miRNA:   3'- -GCUGCCGU-----------CGCUGa-----CGGGG-AUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 40271 0.67 0.30629
Target:  5'- gGACaGGCugcGCGAuCUGUgCCUgucgcuggACGCCCg -3'
miRNA:   3'- gCUG-CCGu--CGCU-GACGgGGA--------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 27707 0.67 0.30629
Target:  5'- gCGcCGGCAGCGGCUcGCCgCCggucauggACuugaugagGCCCu -3'
miRNA:   3'- -GCuGCCGUCGCUGA-CGG-GGa-------UG--------CGGG- -5'
26778 5' -60.8 NC_005808.1 + 1044 0.67 0.30629
Target:  5'- cCGGCGGCAGCa--UGUCgCCgcgaaccgGCGUCCa -3'
miRNA:   3'- -GCUGCCGUCGcugACGG-GGa-------UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 36220 0.68 0.291745
Target:  5'- -cGCGGCGGcCGACcuggUGUaaCCCaGCGCCCc -3'
miRNA:   3'- gcUGCCGUC-GCUG----ACG--GGGaUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 2425 0.68 0.270948
Target:  5'- uGuACGGCAGCaGGCcgGCCUCgaagaucgGCGCCa -3'
miRNA:   3'- gC-UGCCGUCG-CUGa-CGGGGa-------UGCGGg -5'
26778 5' -60.8 NC_005808.1 + 687 0.68 0.270948
Target:  5'- aCGGCGGCgccGGCcgGGCcGCCCaagaUAcCGCCCa -3'
miRNA:   3'- -GCUGCCG---UCG--CUGaCGGGg---AU-GCGGG- -5'
26778 5' -60.8 NC_005808.1 + 4757 0.68 0.268267
Target:  5'- -cACGGCcGCGAUguucucggcguucGCCCacaCUGCGCCCa -3'
miRNA:   3'- gcUGCCGuCGCUGa------------CGGG---GAUGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 38854 0.66 0.396054
Target:  5'- gCGGCGGCAcCGACgUGCCCaccaccgGCGUg- -3'
miRNA:   3'- -GCUGCCGUcGCUG-ACGGGga-----UGCGgg -5'
26778 5' -60.8 NC_005808.1 + 32521 0.76 0.076953
Target:  5'- gGAUGGCA-CGGCUcGCCCCgacgACGCCUc -3'
miRNA:   3'- gCUGCCGUcGCUGA-CGGGGa---UGCGGG- -5'
26778 5' -60.8 NC_005808.1 + 18467 0.74 0.107465
Target:  5'- aGGCGcGCAGcCGGCUGgacuacgaCCCCUACGCgCg -3'
miRNA:   3'- gCUGC-CGUC-GCUGAC--------GGGGAUGCGgG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.