Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26778 | 5' | -60.8 | NC_005808.1 | + | 14893 | 0.68 | 0.298949 |
Target: 5'- cCGGCGGCgAGCcGCUGCCg--GCGCgCg -3' miRNA: 3'- -GCUGCCG-UCGcUGACGGggaUGCGgG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 29260 | 0.78 | 0.056418 |
Target: 5'- gCGAcuuCGGCGGCGAcCUGCCgaaagCCUACGCCg -3' miRNA: 3'- -GCU---GCCGUCGCU-GACGG-----GGAUGCGGg -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 32521 | 0.76 | 0.076953 |
Target: 5'- gGAUGGCA-CGGCUcGCCCCgacgACGCCUc -3' miRNA: 3'- gCUGCCGUcGCUGA-CGGGGa---UGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 13700 | 0.71 | 0.184459 |
Target: 5'- aCGAgUGGuCGGCGACgGCCagcaaCUACGCCa -3' miRNA: 3'- -GCU-GCC-GUCGCUGaCGGg----GAUGCGGg -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 36191 | 0.7 | 0.215697 |
Target: 5'- aCGACaugGGCcGCGACUacaccgggccgGCCggCCUGCGCCUg -3' miRNA: 3'- -GCUG---CCGuCGCUGA-----------CGG--GGAUGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 18467 | 0.74 | 0.107465 |
Target: 5'- aGGCGcGCAGcCGGCUGgacuacgaCCCCUACGCgCg -3' miRNA: 3'- gCUGC-CGUC-GCUGAC--------GGGGAUGCGgG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 38065 | 0.72 | 0.145098 |
Target: 5'- gCGGCGGCA-CGACcGCCCagcACGCCa -3' miRNA: 3'- -GCUGCCGUcGCUGaCGGGga-UGCGGg -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 8671 | 0.71 | 0.174968 |
Target: 5'- --gUGuGCAGCGGCUGCUgCgcCGCCCa -3' miRNA: 3'- gcuGC-CGUCGCUGACGGgGauGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 5154 | 0.69 | 0.257757 |
Target: 5'- aGGCGGCcGUcGCUGCUC--ACGCCCu -3' miRNA: 3'- gCUGCCGuCGcUGACGGGgaUGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 3699 | 0.67 | 0.337029 |
Target: 5'- -cACGGCGacGCG-CUGCCCCaugcgGCGCauCCg -3' miRNA: 3'- gcUGCCGU--CGCuGACGGGGa----UGCG--GG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 38854 | 0.66 | 0.396054 |
Target: 5'- gCGGCGGCAcCGACgUGCCCaccaccgGCGUg- -3' miRNA: 3'- -GCUGCCGUcGCUG-ACGGGga-----UGCGgg -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 13667 | 0.73 | 0.130191 |
Target: 5'- uCGAUGGCAGCGGCgagGCCCUg--GCUUu -3' miRNA: 3'- -GCUGCCGUCGCUGa--CGGGGaugCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 38722 | 0.74 | 0.107465 |
Target: 5'- gCGACGGCAGCG-CgGCCUacagcgacgGCGCCUg -3' miRNA: 3'- -GCUGCCGUCGCuGaCGGGga-------UGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 4913 | 0.69 | 0.232955 |
Target: 5'- uCGACaGGuCGGCGACgaccagcuucuUGCCCUcggGCGCCa -3' miRNA: 3'- -GCUG-CC-GUCGCUG-----------ACGGGGa--UGCGGg -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 8610 | 0.69 | 0.251361 |
Target: 5'- gGAUGGCGuaGGCgugGCCggUACGCCCu -3' miRNA: 3'- gCUGCCGUcgCUGa--CGGggAUGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 248 | 0.72 | 0.145098 |
Target: 5'- cCGGCGGUAGCGAau-CCCCagGCGCUUg -3' miRNA: 3'- -GCUGCCGUCGCUgacGGGGa-UGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 8130 | 0.67 | 0.337029 |
Target: 5'- --uCGGCGGUGACUucccaGCCCUUGcCGUUCa -3' miRNA: 3'- gcuGCCGUCGCUGA-----CGGGGAU-GCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 17079 | 0.67 | 0.340224 |
Target: 5'- gCGGCGGCAaaaccgaccucaucGCGGgcCUGaCCCUgaccaagcacgagcGCGCCCu -3' miRNA: 3'- -GCUGCCGU--------------CGCU--GACgGGGA--------------UGCGGG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 26585 | 0.72 | 0.153122 |
Target: 5'- -aACGGUuucgucaccGGCGAcCUGUCCCUGCGCgCg -3' miRNA: 3'- gcUGCCG---------UCGCU-GACGGGGAUGCGgG- -5' |
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26778 | 5' | -60.8 | NC_005808.1 | + | 28187 | 0.69 | 0.232362 |
Target: 5'- aGGCGcGCcuGGCGAC-GCCCagcuucgCUACGCCUa -3' miRNA: 3'- gCUGC-CG--UCGCUGaCGGG-------GAUGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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