Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26782 | 3' | -54.8 | NC_005808.1 | + | 9544 | 0.73 | 0.274232 |
Target: 5'- --cUGUUCGGCcaguGCGAUCUGCucgccgGUGGCg -3' miRNA: 3'- agcACAAGCCGu---CGUUAGACG------CGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 10868 | 0.74 | 0.253519 |
Target: 5'- gCGUGgcuucggUCGGC-GCGAUgcGCGCGGCg -3' miRNA: 3'- aGCACa------AGCCGuCGUUAgaCGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 7677 | 0.76 | 0.188404 |
Target: 5'- cCGUucUUUGGCGGCGAUCUGCGgcCGGUa -3' miRNA: 3'- aGCAc-AAGCCGUCGUUAGACGC--GCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 13628 | 0.78 | 0.138467 |
Target: 5'- aUCG-GUagCGGCAGCaAGUCcgGCGCGGCc -3' miRNA: 3'- -AGCaCAa-GCCGUCG-UUAGa-CGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 34213 | 0.69 | 0.466766 |
Target: 5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3' miRNA: 3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 28664 | 0.69 | 0.466766 |
Target: 5'- aUCG-GUgcCGGCGGCc-UCgccaGCGCGGCg -3' miRNA: 3'- -AGCaCAa-GCCGUCGuuAGa---CGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 28139 | 0.67 | 0.619197 |
Target: 5'- gUCGgg--CGGCAGCAGcUUGC-CGGUg -3' miRNA: 3'- -AGCacaaGCCGUCGUUaGACGcGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 14884 | 0.67 | 0.619197 |
Target: 5'- ---aGUUgccCGGCuuuCAggGUCUGCGCGGCg -3' miRNA: 3'- agcaCAA---GCCGuc-GU--UAGACGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 25766 | 0.67 | 0.601201 |
Target: 5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3' miRNA: 3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 21573 | 0.67 | 0.574353 |
Target: 5'- cUCGUGccgcucggccacUUCGGUGGCGgucAUCUGCGgauUGGUg -3' miRNA: 3'- -AGCAC------------AAGCCGUCGU---UAGACGC---GCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 30417 | 0.68 | 0.563243 |
Target: 5'- uUCGc--UCGGCauGGCGAUgaGCGCGGg -3' miRNA: 3'- -AGCacaAGCCG--UCGUUAgaCGCGCCg -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 4916 | 0.68 | 0.563243 |
Target: 5'- -gGUGgaaacgUCGGCAGCGAUgCccGCGaCGGUc -3' miRNA: 3'- agCACa-----AGCCGUCGUUA-Ga-CGC-GCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 4480 | 0.68 | 0.519467 |
Target: 5'- cCGUGUucuugUCGGUaucgacGGUAAUCUcacGgGCGGCg -3' miRNA: 3'- aGCACA-----AGCCG------UCGUUAGA---CgCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 18653 | 0.69 | 0.498079 |
Target: 5'- uUCGUGaUCGGgGGCGGUCgcccGCcccCGGCc -3' miRNA: 3'- -AGCACaAGCCgUCGUUAGa---CGc--GCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 8139 | 0.69 | 0.498079 |
Target: 5'- gUUGUGggCGuGCGGguGUCgGCGCuGCg -3' miRNA: 3'- -AGCACaaGC-CGUCguUAGaCGCGcCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 26129 | 0.69 | 0.477094 |
Target: 5'- aUGUGUUCGucGCGGCAGaUUUGgcgcaGCGGCu -3' miRNA: 3'- aGCACAAGC--CGUCGUU-AGACg----CGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 21152 | 0.69 | 0.470884 |
Target: 5'- cCGUGUccgCGcccugguucaacagcGCGGCcugCUGCGCGGCc -3' miRNA: 3'- aGCACAa--GC---------------CGUCGuuaGACGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 18811 | 0.69 | 0.467794 |
Target: 5'- -gGUGaUCuGGCGGCGcaggaagcugcgaauUUUGCGCGGCa -3' miRNA: 3'- agCACaAG-CCGUCGUu--------------AGACGCGCCG- -5' |
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26782 | 3' | -54.8 | NC_005808.1 | + | 33893 | 1.13 | 0.000404 |
Target: 5'- uUCGUGUUCGGCAGCAAUCUGCGCGGCg -3' miRNA: 3'- -AGCACAAGCCGUCGUUAGACGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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