miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 3' -54.8 NC_005808.1 + 42237 0.66 0.630462
Target:  5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3'
miRNA:   3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5'
26782 3' -54.8 NC_005808.1 + 14797 0.67 0.596712
Target:  5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3'
miRNA:   3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14829 0.66 0.685479
Target:  5'- uUCGUGUacgugUCcgagccggacgagGGCAGCGAgUUGCGCgagGGCc -3'
miRNA:   3'- -AGCACA-----AG-------------CCGUCGUUaGACGCG---CCG- -5'
26782 3' -54.8 NC_005808.1 + 22847 0.67 0.594469
Target:  5'- cUCGUGgccggcaacaaCGGCaaccagcccaAGCAGggcgaUGCGCGGCg -3'
miRNA:   3'- -AGCACaa---------GCCG----------UCGUUag---ACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 13628 0.78 0.138467
Target:  5'- aUCG-GUagCGGCAGCaAGUCcgGCGCGGCc -3'
miRNA:   3'- -AGCaCAa-GCCGUCG-UUAGa-CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 9544 0.73 0.274232
Target:  5'- --cUGUUCGGCcaguGCGAUCUGCucgccgGUGGCg -3'
miRNA:   3'- agcACAAGCCGu---CGUUAGACG------CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7210 0.72 0.311727
Target:  5'- gCGaUGUccaCGGCAGC-AUCUGCGCcGCg -3'
miRNA:   3'- aGC-ACAa--GCCGUCGuUAGACGCGcCG- -5'
26782 3' -54.8 NC_005808.1 + 9310 0.71 0.361694
Target:  5'- cUCGgcgaccUGGCGGCGcacGUCgGCGCGGCg -3'
miRNA:   3'- -AGCacaa--GCCGUCGU---UAGaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7772 0.71 0.379542
Target:  5'- ------cCGGC-GCGAUCUGCGcCGGCg -3'
miRNA:   3'- agcacaaGCCGuCGUUAGACGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 37447 0.7 0.446466
Target:  5'- gCGUGa---GCAGCGAcggccgcCUGCGCGGCa -3'
miRNA:   3'- aGCACaagcCGUCGUUa------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 17641 0.67 0.619197
Target:  5'- aUCGUG--CGGCAGUacggccacGAUCUugaugGCGuCGGCg -3'
miRNA:   3'- -AGCACaaGCCGUCG--------UUAGA-----CGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 28139 0.67 0.619197
Target:  5'- gUCGgg--CGGCAGCAGcUUGC-CGGUg -3'
miRNA:   3'- -AGCacaaGCCGUCGUUaGACGcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14884 0.67 0.619197
Target:  5'- ---aGUUgccCGGCuuuCAggGUCUGCGCGGCg -3'
miRNA:   3'- agcaCAA---GCCGuc-GU--UAGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 25766 0.67 0.601201
Target:  5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3'
miRNA:   3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 21573 0.67 0.574353
Target:  5'- cUCGUGccgcucggccacUUCGGUGGCGgucAUCUGCGgauUGGUg -3'
miRNA:   3'- -AGCAC------------AAGCCGUCGU---UAGACGC---GCCG- -5'
26782 3' -54.8 NC_005808.1 + 30417 0.68 0.563243
Target:  5'- uUCGc--UCGGCauGGCGAUgaGCGCGGg -3'
miRNA:   3'- -AGCacaAGCCG--UCGUUAgaCGCGCCg -5'
26782 3' -54.8 NC_005808.1 + 4916 0.68 0.563243
Target:  5'- -gGUGgaaacgUCGGCAGCGAUgCccGCGaCGGUc -3'
miRNA:   3'- agCACa-----AGCCGUCGUUA-Ga-CGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 12546 0.68 0.552192
Target:  5'- cUCGgcgUCGGUgaauuucuugccGGCcucgcgCUGCGCGGCg -3'
miRNA:   3'- -AGCacaAGCCG------------UCGuua---GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 9847 0.7 0.446466
Target:  5'- cUCGguUUCGGCGuCGAUgaGCGUGGCa -3'
miRNA:   3'- -AGCacAAGCCGUcGUUAgaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 422 0.7 0.450487
Target:  5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3'
miRNA:   3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.