miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 3' -54.8 NC_005808.1 + 5334 0.68 0.563243
Target:  5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3'
miRNA:   3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 24795 0.66 0.664224
Target:  5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3'
miRNA:   3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5'
26782 3' -54.8 NC_005808.1 + 8202 0.66 0.630462
Target:  5'- uUCGUcagcgacaUGGCGGcCAGUUcgUGCGCGGCc -3'
miRNA:   3'- -AGCAcaa-----GCCGUC-GUUAG--ACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 12571 0.68 0.563243
Target:  5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3'
miRNA:   3'- agCACAagCCGUcGUUagaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 485 0.72 0.311727
Target:  5'- gUCGgaugccUCGGCAGCAuaCUGCgccGCGGCg -3'
miRNA:   3'- -AGCaca---AGCCGUCGUuaGACG---CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 34213 0.69 0.466766
Target:  5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3'
miRNA:   3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7677 0.76 0.188404
Target:  5'- cCGUucUUUGGCGGCGAUCUGCGgcCGGUa -3'
miRNA:   3'- aGCAc-AAGCCGUCGUUAGACGC--GCCG- -5'
26782 3' -54.8 NC_005808.1 + 17641 0.67 0.619197
Target:  5'- aUCGUG--CGGCAGUacggccacGAUCUugaugGCGuCGGCg -3'
miRNA:   3'- -AGCACaaGCCGUCG--------UUAGA-----CGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 28139 0.67 0.619197
Target:  5'- gUCGgg--CGGCAGCAGcUUGC-CGGUg -3'
miRNA:   3'- -AGCacaaGCCGUCGUUaGACGcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14884 0.67 0.619197
Target:  5'- ---aGUUgccCGGCuuuCAggGUCUGCGCGGCg -3'
miRNA:   3'- agcaCAA---GCCGuc-GU--UAGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 422 0.7 0.450487
Target:  5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3'
miRNA:   3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 9847 0.7 0.446466
Target:  5'- cUCGguUUCGGCGuCGAUgaGCGUGGCa -3'
miRNA:   3'- -AGCacAAGCCGUcGUUAgaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 37447 0.7 0.446466
Target:  5'- gCGUGa---GCAGCGAcggccgcCUGCGCGGCa -3'
miRNA:   3'- aGCACaagcCGUCGUUa------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7210 0.72 0.311727
Target:  5'- gCGaUGUccaCGGCAGC-AUCUGCGCcGCg -3'
miRNA:   3'- aGC-ACAa--GCCGUCGuUAGACGCGcCG- -5'
26782 3' -54.8 NC_005808.1 + 4480 0.68 0.519467
Target:  5'- cCGUGUucuugUCGGUaucgacGGUAAUCUcacGgGCGGCg -3'
miRNA:   3'- aGCACA-----AGCCG------UCGUUAGA---CgCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 12546 0.68 0.552192
Target:  5'- cUCGgcgUCGGUgaauuucuugccGGCcucgcgCUGCGCGGCg -3'
miRNA:   3'- -AGCacaAGCCG------------UCGuua---GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 4916 0.68 0.563243
Target:  5'- -gGUGgaaacgUCGGCAGCGAUgCccGCGaCGGUc -3'
miRNA:   3'- agCACa-----AGCCGUCGUUA-Ga-CGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 30417 0.68 0.563243
Target:  5'- uUCGc--UCGGCauGGCGAUgaGCGCGGg -3'
miRNA:   3'- -AGCacaAGCCG--UCGUUAgaCGCGCCg -5'
26782 3' -54.8 NC_005808.1 + 21573 0.67 0.574353
Target:  5'- cUCGUGccgcucggccacUUCGGUGGCGgucAUCUGCGgauUGGUg -3'
miRNA:   3'- -AGCAC------------AAGCCGUCGU---UAGACGC---GCCG- -5'
26782 3' -54.8 NC_005808.1 + 25766 0.67 0.601201
Target:  5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3'
miRNA:   3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.