miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 3' -54.8 NC_005808.1 + 41049 0.67 0.619197
Target:  5'- aUCGagcgGUUCGGCuuuaccaaGGCcgaacugCUGgGCGGCg -3'
miRNA:   3'- -AGCa---CAAGCCG--------UCGuua----GACgCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 19246 0.81 0.079911
Target:  5'- cCGUGUucaUCGGCGGCGAggccgucgaaUUGCGCGGCu -3'
miRNA:   3'- aGCACA---AGCCGUCGUUa---------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 38713 0.78 0.138467
Target:  5'- ---aGUUCGGCGGCGAcggCaGCGCGGCc -3'
miRNA:   3'- agcaCAAGCCGUCGUUa--GaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 12571 0.68 0.563243
Target:  5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3'
miRNA:   3'- agCACAagCCGUcGUUagaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 10244 0.67 0.585512
Target:  5'- cUCGgcggCGaccGCAGCGAcCUGgGCGGCg -3'
miRNA:   3'- -AGCacaaGC---CGUCGUUaGACgCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 31378 0.77 0.150736
Target:  5'- gCGUGggCGGgaacgUGGCGGUCaUGCGCGGCa -3'
miRNA:   3'- aGCACaaGCC-----GUCGUUAG-ACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14889 0.68 0.519467
Target:  5'- --aUGacCGGCGGCGAgccgCUGC-CGGCg -3'
miRNA:   3'- agcACaaGCCGUCGUUa---GACGcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 5334 0.68 0.563243
Target:  5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3'
miRNA:   3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14797 0.67 0.596712
Target:  5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3'
miRNA:   3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 40453 0.66 0.652986
Target:  5'- aCGUGUaCGGCGGCGcggUUGaC-CGGCu -3'
miRNA:   3'- aGCACAaGCCGUCGUua-GAC-GcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 39056 0.66 0.686594
Target:  5'- gCGcUGUUCGGCGGCAG-CUG-GCa-- -3'
miRNA:   3'- aGC-ACAAGCCGUCGUUaGACgCGccg -5'
26782 3' -54.8 NC_005808.1 + 7535 0.72 0.326963
Target:  5'- cCGUGcgcUCGGCGGCGugcucgAUCUGCGgcgccacCGGCu -3'
miRNA:   3'- aGCACa--AGCCGUCGU------UAGACGC-------GCCG- -5'
26782 3' -54.8 NC_005808.1 + 12466 0.72 0.311727
Target:  5'- -gGUGcaggcCGGCGGCGuguUCUgGCGCGGCc -3'
miRNA:   3'- agCACaa---GCCGUCGUu--AGA-CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 22847 0.67 0.594469
Target:  5'- cUCGUGgccggcaacaaCGGCaaccagcccaAGCAGggcgaUGCGCGGCg -3'
miRNA:   3'- -AGCACaa---------GCCG----------UCGUUag---ACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 26775 0.67 0.596712
Target:  5'- gCGUGUUCG--AGUc--CUGCGCGGUg -3'
miRNA:   3'- aGCACAAGCcgUCGuuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 41786 0.68 0.508725
Target:  5'- ---cGUUCGGCaagGGCugg--GCGCGGCg -3'
miRNA:   3'- agcaCAAGCCG---UCGuuagaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 42237 0.66 0.630462
Target:  5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3'
miRNA:   3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5'
26782 3' -54.8 NC_005808.1 + 24795 0.66 0.664224
Target:  5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3'
miRNA:   3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5'
26782 3' -54.8 NC_005808.1 + 34599 0.68 0.541207
Target:  5'- uUCGUgcGUUCGGCAaaCGA---GCGCGGCg -3'
miRNA:   3'- -AGCA--CAAGCCGUc-GUUagaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 26831 0.67 0.585512
Target:  5'- gUCGUGcgucgcaccaUUGGCGGCAA-CgagGUGCGGUa -3'
miRNA:   3'- -AGCACa---------AGCCGUCGUUaGa--CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.