miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 3' -54.8 NC_005808.1 + 18653 0.69 0.498079
Target:  5'- uUCGUGaUCGGgGGCGGUCgcccGCcccCGGCc -3'
miRNA:   3'- -AGCACaAGCCgUCGUUAGa---CGc--GCCG- -5'
26782 3' -54.8 NC_005808.1 + 9847 0.7 0.446466
Target:  5'- cUCGguUUCGGCGuCGAUgaGCGUGGCa -3'
miRNA:   3'- -AGCacAAGCCGUcGUUAgaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 422 0.7 0.450487
Target:  5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3'
miRNA:   3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 34213 0.69 0.466766
Target:  5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3'
miRNA:   3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 28664 0.69 0.466766
Target:  5'- aUCG-GUgcCGGCGGCc-UCgccaGCGCGGCg -3'
miRNA:   3'- -AGCaCAa-GCCGUCGuuAGa---CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 18811 0.69 0.467794
Target:  5'- -gGUGaUCuGGCGGCGcaggaagcugcgaauUUUGCGCGGCa -3'
miRNA:   3'- agCACaAG-CCGUCGUu--------------AGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 21152 0.69 0.470884
Target:  5'- cCGUGUccgCGcccugguucaacagcGCGGCcugCUGCGCGGCc -3'
miRNA:   3'- aGCACAa--GC---------------CGUCGuuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 26129 0.69 0.477094
Target:  5'- aUGUGUUCGucGCGGCAGaUUUGgcgcaGCGGCu -3'
miRNA:   3'- aGCACAAGC--CGUCGUU-AGACg----CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 8139 0.69 0.498079
Target:  5'- gUUGUGggCGuGCGGguGUCgGCGCuGCg -3'
miRNA:   3'- -AGCACaaGC-CGUCguUAGaCGCGcCG- -5'
26782 3' -54.8 NC_005808.1 + 37447 0.7 0.446466
Target:  5'- gCGUGa---GCAGCGAcggccgcCUGCGCGGCa -3'
miRNA:   3'- aGCACaagcCGUCGUUa------GACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7772 0.71 0.379542
Target:  5'- ------cCGGC-GCGAUCUGCGcCGGCg -3'
miRNA:   3'- agcacaaGCCGuCGUUAGACGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 1350 0.71 0.379542
Target:  5'- cCGUGgUCGGCGGCc--UUGCGCauccGGCg -3'
miRNA:   3'- aGCACaAGCCGUCGuuaGACGCG----CCG- -5'
26782 3' -54.8 NC_005808.1 + 13628 0.78 0.138467
Target:  5'- aUCG-GUagCGGCAGCaAGUCcgGCGCGGCc -3'
miRNA:   3'- -AGCaCAa-GCCGUCG-UUAGa-CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7677 0.76 0.188404
Target:  5'- cCGUucUUUGGCGGCGAUCUGCGgcCGGUa -3'
miRNA:   3'- aGCAc-AAGCCGUCGUUAGACGC--GCCG- -5'
26782 3' -54.8 NC_005808.1 + 10868 0.74 0.253519
Target:  5'- gCGUGgcuucggUCGGC-GCGAUgcGCGCGGCg -3'
miRNA:   3'- aGCACa------AGCCGuCGUUAgaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 9544 0.73 0.274232
Target:  5'- --cUGUUCGGCcaguGCGAUCUGCucgccgGUGGCg -3'
miRNA:   3'- agcACAAGCCGu---CGUUAGACG------CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 7210 0.72 0.311727
Target:  5'- gCGaUGUccaCGGCAGC-AUCUGCGCcGCg -3'
miRNA:   3'- aGC-ACAa--GCCGUCGuUAGACGCGcCG- -5'
26782 3' -54.8 NC_005808.1 + 485 0.72 0.311727
Target:  5'- gUCGgaugccUCGGCAGCAuaCUGCgccGCGGCg -3'
miRNA:   3'- -AGCaca---AGCCGUCGUuaGACG---CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 9310 0.71 0.361694
Target:  5'- cUCGgcgaccUGGCGGCGcacGUCgGCGCGGCg -3'
miRNA:   3'- -AGCacaa--GCCGUCGU---UAGaCGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 25743 0.71 0.370545
Target:  5'- cCGg---CGGCAGCAcgCUGgGCGcGCu -3'
miRNA:   3'- aGCacaaGCCGUCGUuaGACgCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.